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The map label for this gene is rlpA [H]

Identifier: 157369442

GI number: 157369442

Start: 1315298

End: 1316383

Strand: Reverse

Name: rlpA [H]

Synonym: Spro_1199

Alternate gene names: 157369442

Gene position: 1316383-1315298 (Counterclockwise)

Preceding gene: 157369443

Following gene: 157369441

Centisome position: 24.16

GC content: 61.69

Gene sequence:

>1086_bases
ATGCGTAAGGAATGGCTTTGGGTCGGCGTTGTCGCGGTATTACTTTCCGCCTGTACCGCCCCGACCACGGAACAGCAAGC
GCCACCGCAGCAGCCGTATAACGGCCCCGTGGTGGAGATCGGTGGCGTTGAGCCTCAATATGAACCCTATAACCCTAATA
ACATGCAGGATTATAAGGTTAATGGCGACACTTACCGCATCGTCAAGGATCCGCAGAACTTCTCGCAGACCGGTCTGGCC
AGCTCCTACGGTGAAGAAGCCCGAGGCAATACCACCGCGCTGGGGGAACAGTTCGATCCTAATGGGTTAACCGCCGCGCA
CCCAACGCTGCCGATCCCAAGCTACGTACGCGTGACCAACCTGGCCAATGGCCGCCAACTGGTCGTGCGAGTGAACGATC
GCGGGCCTTACACCCAGGGCCGCATTATCGATTTGTCGAAAGCCGTCGCCGACCGCCTGAACCTGTCCAACAACACCAAG
GTCAAGGTTGATTTCATCAACGTGGCCCCGGACGGCACTCTGAGCGGCCCTGGCACCATTGGTACTACCGTTGCCAAACA
AAGCTACGCCCTGCCCGCACGTCCGGAACTCGGCTCCAGCAACATGGGAACCCCGGTGCAACAGGATGTCCCGGTCCCCA
ACGGTGCCGCAGTGCACCCGATTGACAACAGCAGTTTGAACACCGGCGACAACGCCCCGGCCGCTACCACCGGCAATAGC
CGCAGCGGTTTCCTGGGTGCGCCAAGCGCCGTACCGGCCGGCGTGCTGGAAGGCTCAGAGCCTGAACCTGCCGTCAGTGC
CGCAGCCATTGCCGCACCGGTCGCGGCCTCCGCCGCCGTTGCCGCCAATGCTTCTGCTGGTGGTAGCTACGTGGTGCAGG
TCGGCGCACTGAGCAGTGCCGAACGCGCGCAGAGCTGGCAACAAAGCCTGAGCCAAAAGTTTGGCGTACCGGGTAAAGTG
GCCGCCAGCGGCAGCGTCTATCGCGTACAGCTGGGCCCGTTCAGCAGCCGTCAGCAAGCCGCCGAACTGCAGCAGCGTCT
GGCCAGCGAAGCGCAGCAACAATCTTTTGTCACTGCCGCACCTTAA

Upstream 100 bases:

>100_bases
GGGGGTTCGGCGCTGATTGTGCTTATGGCTGGGTTCGGCATTATCATGTCGATCCACACGCATCGAAAAATGATGTCCAA
GAGTTTATAAGGGGTGAGTA

Downstream 100 bases:

>100_bases
AACAAATATCCGGCAGGCGAACGCGGTTGATAAGCGTTCCTTTAGCTGAAACATTTTCTTTCAGCTAAAGCCAATAAAGC
GCGATTAGTCAGAGCATTGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MRKEWLWVGVVAVLLSACTAPTTEQQAPPQQPYNGPVVEIGGVEPQYEPYNPNNMQDYKVNGDTYRIVKDPQNFSQTGLA
SSYGEEARGNTTALGEQFDPNGLTAAHPTLPIPSYVRVTNLANGRQLVVRVNDRGPYTQGRIIDLSKAVADRLNLSNNTK
VKVDFINVAPDGTLSGPGTIGTTVAKQSYALPARPELGSSNMGTPVQQDVPVPNGAAVHPIDNSSLNTGDNAPAATTGNS
RSGFLGAPSAVPAGVLEGSEPEPAVSAAAIAAPVAASAAVAANASAGGSYVVQVGALSSAERAQSWQQSLSQKFGVPGKV
AASGSVYRVQLGPFSSRQQAAELQQRLASEAQQQSFVTAAP

Sequences:

>Translated_361_residues
MRKEWLWVGVVAVLLSACTAPTTEQQAPPQQPYNGPVVEIGGVEPQYEPYNPNNMQDYKVNGDTYRIVKDPQNFSQTGLA
SSYGEEARGNTTALGEQFDPNGLTAAHPTLPIPSYVRVTNLANGRQLVVRVNDRGPYTQGRIIDLSKAVADRLNLSNNTK
VKVDFINVAPDGTLSGPGTIGTTVAKQSYALPARPELGSSNMGTPVQQDVPVPNGAAVHPIDNSSLNTGDNAPAATTGNS
RSGFLGAPSAVPAGVLEGSEPEPAVSAAAIAAPVAASAAVAANASAGGSYVVQVGALSSAERAQSWQQSLSQKFGVPGKV
AASGSVYRVQLGPFSSRQQAAELQQRLASEAQQQSFVTAAP
>Mature_361_residues
MRKEWLWVGVVAVLLSACTAPTTEQQAPPQQPYNGPVVEIGGVEPQYEPYNPNNMQDYKVNGDTYRIVKDPQNFSQTGLA
SSYGEEARGNTTALGEQFDPNGLTAAHPTLPIPSYVRVTNLANGRQLVVRVNDRGPYTQGRIIDLSKAVADRLNLSNNTK
VKVDFINVAPDGTLSGPGTIGTTVAKQSYALPARPELGSSNMGTPVQQDVPVPNGAAVHPIDNSSLNTGDNAPAATTGNS
RSGFLGAPSAVPAGVLEGSEPEPAVSAAAIAAPVAASAAVAANASAGGSYVVQVGALSSAERAQSWQQSLSQKFGVPGKV
AASGSVYRVQLGPFSSRQQAAELQQRLASEAQQQSFVTAAP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=369, Percent_Identity=54.4715447154472, Blast_Score=346, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 37433; Mature: 37433

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKEWLWVGVVAVLLSACTAPTTEQQAPPQQPYNGPVVEIGGVEPQYEPYNPNNMQDYKV
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEE
NGDTYRIVKDPQNFSQTGLASSYGEEARGNTTALGEQFDPNGLTAAHPTLPIPSYVRVTN
CCCEEEEEECCCCHHHHCCHHHCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEE
LANGRQLVVRVNDRGPYTQGRIIDLSKAVADRLNLSNNTKVKVDFINVAPDGTLSGPGTI
CCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCC
GTTVAKQSYALPARPELGSSNMGTPVQQDVPVPNGAAVHPIDNSSLNTGDNAPAATTGNS
HHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
RSGFLGAPSAVPAGVLEGSEPEPAVSAAAIAAPVAASAAVAANASAGGSYVVQVGALSSA
CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCH
ERAQSWQQSLSQKFGVPGKVAASGSVYRVQLGPFSSRQQAAELQQRLASEAQQQSFVTAA
HHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEECC
P
C
>Mature Secondary Structure
MRKEWLWVGVVAVLLSACTAPTTEQQAPPQQPYNGPVVEIGGVEPQYEPYNPNNMQDYKV
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEE
NGDTYRIVKDPQNFSQTGLASSYGEEARGNTTALGEQFDPNGLTAAHPTLPIPSYVRVTN
CCCEEEEEECCCCHHHHCCHHHCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEE
LANGRQLVVRVNDRGPYTQGRIIDLSKAVADRLNLSNNTKVKVDFINVAPDGTLSGPGTI
CCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCC
GTTVAKQSYALPARPELGSSNMGTPVQQDVPVPNGAAVHPIDNSSLNTGDNAPAATTGNS
HHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
RSGFLGAPSAVPAGVLEGSEPEPAVSAAAIAAPVAASAAVAANASAGGSYVVQVGALSSA
CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCH
ERAQSWQQSLSQKFGVPGKVAASGSVYRVQLGPFSSRQQAAELQQRLASEAQQQSFVTAA
HHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCEEECC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]