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The map label for this gene is yjjV [H]

Identifier: 157368902

GI number: 157368902

Start: 721013

End: 721786

Strand: Direct

Name: yjjV [H]

Synonym: Spro_0657

Alternate gene names: 157368902

Gene position: 721013-721786 (Clockwise)

Preceding gene: 157368901

Following gene: 157368903

Centisome position: 13.23

GC content: 59.82

Gene sequence:

>774_bases
ATGCACGACTTCACCGACACCCACTGCCACTTCGATTTCCCGCCGTTCAGCGGTCAAGAACGCGAAAGCCTGGAGTTGGC
GGAGCAAGCGGGCGTGCGACGGATTATCGTACCTACGGTGACCGCCGATCGTTTTGTGCGGGTATTGAAGCTGGCACGCG
ATTATCCACCGCTGTTTGCCGCCCTGGGGCTACACCCGCTGTATATTGCCGAGCACCATGAGCCGGAGCTGGAACAATTG
GCGGGGTTCCTGGCCAGCCGACCGCCGAAGCTGGTGGCGGTAGGGGAGATTGGCCTCGATCTGTATATGGAAAACCCGCA
GTTCGAGCGCCAGCAGCAGGTGTTAACCGCGCAATTGAAGCTGGCAAAGCAACATGATTTGCCAGTGATCCTGCATTCGC
GCCGCAGCCACGATCAGTTGGCGGCGATGCTGCGTCGCACCGAAGTACCTCGTCGCGGCGTGGTGCACGGCTTTGCTGGC
AGTCTGTCGCAGGCGCAGGCGTTTATCCGCCTGGGATATTACATTGGCGTAGGAGGCACCATCAGCTATGAGCGGGCGCA
GAAAACCCGCAATGTCATGGCCCAACTGCCGTTGACGTCGCTGCTGTTGGAAACCGATGCGCCCGACATGCCGCTGGCCG
GTTACCAGGGGCAACCGAACCGCCCCGAGCGCGCTGCTGAAGTGTTCGCTGCTCTGTGCCAATTGCGCCCAGAGTCGGAG
GAGATGATCGGCGCCCAATTACAGCAAAATACACGAGAGTTATTTTCAGTGTGA

Upstream 100 bases:

>100_bases
GTCACCCGCGCGATCTTGCCAACCCGTCGGAAGCCAAACTGGCGGCGATGGACATTATTTTGCCGGGCGAAGTACCACCG
GGCGAGGGTGGCCTGCTGTG

Downstream 100 bases:

>100_bases
TGGGGTGTTTTTCCGGGAATTATATTTTCGTCATGGATGCTTTGCCATTCGTTTATTTTGTTTTTAGCGCATTGTAATTG
CTTTTCGAATAACAAGTTAA

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MHDFTDTHCHFDFPPFSGQERESLELAEQAGVRRIIVPTVTADRFVRVLKLARDYPPLFAALGLHPLYIAEHHEPELEQL
AGFLASRPPKLVAVGEIGLDLYMENPQFERQQQVLTAQLKLAKQHDLPVILHSRRSHDQLAAMLRRTEVPRRGVVHGFAG
SLSQAQAFIRLGYYIGVGGTISYERAQKTRNVMAQLPLTSLLLETDAPDMPLAGYQGQPNRPERAAEVFAALCQLRPESE
EMIGAQLQQNTRELFSV

Sequences:

>Translated_257_residues
MHDFTDTHCHFDFPPFSGQERESLELAEQAGVRRIIVPTVTADRFVRVLKLARDYPPLFAALGLHPLYIAEHHEPELEQL
AGFLASRPPKLVAVGEIGLDLYMENPQFERQQQVLTAQLKLAKQHDLPVILHSRRSHDQLAAMLRRTEVPRRGVVHGFAG
SLSQAQAFIRLGYYIGVGGTISYERAQKTRNVMAQLPLTSLLLETDAPDMPLAGYQGQPNRPERAAEVFAALCQLRPESE
EMIGAQLQQNTRELFSV
>Mature_257_residues
MHDFTDTHCHFDFPPFSGQERESLELAEQAGVRRIIVPTVTADRFVRVLKLARDYPPLFAALGLHPLYIAEHHEPELEQL
AGFLASRPPKLVAVGEIGLDLYMENPQFERQQQVLTAQLKLAKQHDLPVILHSRRSHDQLAAMLRRTEVPRRGVVHGFAG
SLSQAQAFIRLGYYIGVGGTISYERAQKTRNVMAQLPLTSLLLETDAPDMPLAGYQGQPNRPERAAEVFAALCQLRPESE
EMIGAQLQQNTRELFSV

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=28.8389513108614, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=29.2134831460674, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI14042943, Length=190, Percent_Identity=30.5263157894737, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=28.3088235294118, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI225903439, Length=168, Percent_Identity=32.7380952380952, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI226061595, Length=224, Percent_Identity=29.0178571428571, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI226061614, Length=255, Percent_Identity=28.6274509803922, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI225903424, Length=220, Percent_Identity=28.6363636363636, Blast_Score=76, Evalue=3e-14,
Organism=Escherichia coli, GI87082439, Length=254, Percent_Identity=65.3543307086614, Blast_Score=337, Evalue=4e-94,
Organism=Escherichia coli, GI48994985, Length=249, Percent_Identity=27.3092369477912, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=25.4826254826255, Blast_Score=97, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17559024, Length=216, Percent_Identity=26.8518518518519, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=260, Percent_Identity=25.3846153846154, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI221330018, Length=268, Percent_Identity=27.9850746268657, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24586117, Length=266, Percent_Identity=27.8195488721804, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24648690, Length=195, Percent_Identity=29.2307692307692, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28882; Mature: 28882

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDFTDTHCHFDFPPFSGQERESLELAEQAGVRRIIVPTVTADRFVRVLKLARDYPPLFA
CCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCHHHH
ALGLHPLYIAEHHEPELEQLAGFLASRPPKLVAVGEIGLDLYMENPQFERQQQVLTAQLK
HHCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHH
LAKQHDLPVILHSRRSHDQLAAMLRRTEVPRRGVVHGFAGSLSQAQAFIRLGYYIGVGGT
HHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHEECCCE
ISYERAQKTRNVMAQLPLTSLLLETDAPDMPLAGYQGQPNRPERAAEVFAALCQLRPESE
ECHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
EMIGAQLQQNTRELFSV
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHDFTDTHCHFDFPPFSGQERESLELAEQAGVRRIIVPTVTADRFVRVLKLARDYPPLFA
CCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCHHHH
ALGLHPLYIAEHHEPELEQLAGFLASRPPKLVAVGEIGLDLYMENPQFERQQQVLTAQLK
HHCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHH
LAKQHDLPVILHSRRSHDQLAAMLRRTEVPRRGVVHGFAGSLSQAQAFIRLGYYIGVGGT
HHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHEECCCE
ISYERAQKTRNVMAQLPLTSLLLETDAPDMPLAGYQGQPNRPERAAEVFAALCQLRPESE
ECHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
EMIGAQLQQNTRELFSV
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]