Click here to switch to the map view.

The map label for this gene is gfcE [H]

Identifier: 156977873

GI number: 156977873

Start: 1801787

End: 1802908

Strand: Direct

Name: gfcE [H]

Synonym: VIBHAR_06665

Alternate gene names: 156977873

Gene position: 1801787-1802908 (Clockwise)

Preceding gene: 156977872

Following gene: 156977874

Centisome position: 81.75

GC content: 45.19

Gene sequence:

>1122_bases
ATGAATTTCAACTATACAAAGCTAGGTAGTTTACTCCTTTCCTCTGTACTTCTCGCCGGGTGTACAGTTCCGGGCAGTCA
CTTATCCACGGGTGGAAAACACATCGTTGAAGACAACAGCTCCAATACGGCGGCAGATTTTAACGTCTTTCCACTGACTC
TTGATAAAGTCTCGCAGCTAAAAAGTTCAGATGTAGAGACCAAAGCCAACCCAAATCTTGACCTACAACTCGCGGCTTAC
GAGTATGAAGTAGGTCCTGGCGATATTCTAAATATCACTATTTGGGATCACCCTGAACTTACTATTCCAGCAGGCTCTTA
CCGTAGCTCTGAAGAAGCGGGTAACTGGGTGCATGCTGATGGCACAATTTTCTATCCATACATCGGTATTGTTGAAGTTG
CGGGTAAAAATGTTCGCCAAATTCGTACCATTATTGCTAACAAATTGGCGAAGTACATTGAGAGCCCACAAGTAGATGTG
AGTGTTGCGGCATTTCGTTCCAAGAAATCTTACATCACTGGCGAGGTTAACAAGCCTGGTCAACAACCTATCACCAATAT
CCCACTTACGCTTCTTGATGCAGTTAACCGCGCTGGCGGTCTAGCAGAAGATGCGGATTGGCGTAACGTCACACTGACAC
GCCAAGGCAAAGTCGAAAACATTTCTCTCTATGCGCTAATGCAAGAGGGTGACCTTACTGAAAACCGATTACTTCAACCT
GGCGACATCGTACATGTGCCAAGAAATGACACCCAAAAAGTGTTTGTTATGGGTGAAGTTAACGATCCTAAGCTACTAAA
AATGGATCGCGCAGGCATGAGCTTAACCGAGGCTCTAAGCAATGTTGGTGGTATCAACCAACTTTCTGCGGATGCAACTG
GCGTTTTTGTCATCAGAAAATCTCAAGACAATCAAGCATTAGGCGACATTTATCAACTTGATGTCTCCGACGCTGCAGCG
TTAGTAATTGGCACTGAGTTTGACCTAAAGCCTTATGACATTGTGTATGTTACCGCCGCACCGATCAGTCGTTGGAACCG
TGTCATCGCACAGCTAGTACCAACAATTTCAGGATTCAATGAGCTTACAGAAGGTGTTCTACGCGTTAGAAACTGGCCGT
AA

Upstream 100 bases:

>100_bases
ATAAATTAAACCTAATAATAATGCCCAATTAAATTATGGCGCGTTGCTAAATAATGTTGCTATTAGCAACTCGCTCTTTA
CGTCAGATGAATGAAAACGC

Downstream 100 bases:

>100_bases
TTCGAGTGATCTGGAAAGGGCTTTATAAACAGAAGCTCTTTCCAATAGTGATAGATAAGGAACAATCTATGTTTTCAAAC
ATTCTCGTCGTTTGCGTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: Group 4 capsule protein E homolog [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MNFNYTKLGSLLLSSVLLAGCTVPGSHLSTGGKHIVEDNSSNTAADFNVFPLTLDKVSQLKSSDVETKANPNLDLQLAAY
EYEVGPGDILNITIWDHPELTIPAGSYRSSEEAGNWVHADGTIFYPYIGIVEVAGKNVRQIRTIIANKLAKYIESPQVDV
SVAAFRSKKSYITGEVNKPGQQPITNIPLTLLDAVNRAGGLAEDADWRNVTLTRQGKVENISLYALMQEGDLTENRLLQP
GDIVHVPRNDTQKVFVMGEVNDPKLLKMDRAGMSLTEALSNVGGINQLSADATGVFVIRKSQDNQALGDIYQLDVSDAAA
LVIGTEFDLKPYDIVYVTAAPISRWNRVIAQLVPTISGFNELTEGVLRVRNWP

Sequences:

>Translated_373_residues
MNFNYTKLGSLLLSSVLLAGCTVPGSHLSTGGKHIVEDNSSNTAADFNVFPLTLDKVSQLKSSDVETKANPNLDLQLAAY
EYEVGPGDILNITIWDHPELTIPAGSYRSSEEAGNWVHADGTIFYPYIGIVEVAGKNVRQIRTIIANKLAKYIESPQVDV
SVAAFRSKKSYITGEVNKPGQQPITNIPLTLLDAVNRAGGLAEDADWRNVTLTRQGKVENISLYALMQEGDLTENRLLQP
GDIVHVPRNDTQKVFVMGEVNDPKLLKMDRAGMSLTEALSNVGGINQLSADATGVFVIRKSQDNQALGDIYQLDVSDAAA
LVIGTEFDLKPYDIVYVTAAPISRWNRVIAQLVPTISGFNELTEGVLRVRNWP
>Mature_373_residues
MNFNYTKLGSLLLSSVLLAGCTVPGSHLSTGGKHIVEDNSSNTAADFNVFPLTLDKVSQLKSSDVETKANPNLDLQLAAY
EYEVGPGDILNITIWDHPELTIPAGSYRSSEEAGNWVHADGTIFYPYIGIVEVAGKNVRQIRTIIANKLAKYIESPQVDV
SVAAFRSKKSYITGEVNKPGQQPITNIPLTLLDAVNRAGGLAEDADWRNVTLTRQGKVENISLYALMQEGDLTENRLLQP
GDIVHVPRNDTQKVFVMGEVNDPKLLKMDRAGMSLTEALSNVGGINQLSADATGVFVIRKSQDNQALGDIYQLDVSDAAA
LVIGTEFDLKPYDIVYVTAAPISRWNRVIAQLVPTISGFNELTEGVLRVRNWP

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=378, Percent_Identity=57.1428571428571, Blast_Score=449, Evalue=1e-127,
Organism=Escherichia coli, GI1788376, Length=373, Percent_Identity=56.5683646112601, Blast_Score=434, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 40669; Mature: 40669

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNYTKLGSLLLSSVLLAGCTVPGSHLSTGGKHIVEDNSSNTAADFNVFPLTLDKVSQL
CCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEECCCCCCEEEEEEEEEEHHHHHHH
KSSDVETKANPNLDLQLAAYEYEVGPGDILNITIWDHPELTIPAGSYRSSEEAGNWVHAD
HCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEECCCCCCCCHHCCCEEECC
GTIFYPYIGIVEVAGKNVRQIRTIIANKLAKYIESPQVDVSVAAFRSKKSYITGEVNKPG
CEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCEEEECCCCCC
QQPITNIPLTLLDAVNRAGGLAEDADWRNVTLTRQGKVENISLYALMQEGDLTENRLLQP
CCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCHHHCCCC
GDIVHVPRNDTQKVFVMGEVNDPKLLKMDRAGMSLTEALSNVGGINQLSADATGVFVIRK
CCEEECCCCCCEEEEEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEE
SQDNQALGDIYQLDVSDAAALVIGTEFDLKPYDIVYVTAAPISRWNRVIAQLVPTISGFN
CCCCCCCCCEEEECCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHH
ELTEGVLRVRNWP
HHHHHHHHHCCCC
>Mature Secondary Structure
MNFNYTKLGSLLLSSVLLAGCTVPGSHLSTGGKHIVEDNSSNTAADFNVFPLTLDKVSQL
CCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEECCCCCCEEEEEEEEEEHHHHHHH
KSSDVETKANPNLDLQLAAYEYEVGPGDILNITIWDHPELTIPAGSYRSSEEAGNWVHAD
HCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCEEECCCCCCCCHHCCCEEECC
GTIFYPYIGIVEVAGKNVRQIRTIIANKLAKYIESPQVDVSVAAFRSKKSYITGEVNKPG
CEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCEEEECCCCCC
QQPITNIPLTLLDAVNRAGGLAEDADWRNVTLTRQGKVENISLYALMQEGDLTENRLLQP
CCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCHHHCCCC
GDIVHVPRNDTQKVFVMGEVNDPKLLKMDRAGMSLTEALSNVGGINQLSADATGVFVIRK
CCEEECCCCCCEEEEEEEECCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEE
SQDNQALGDIYQLDVSDAAALVIGTEFDLKPYDIVYVTAAPISRWNRVIAQLVPTISGFN
CCCCCCCCCEEEECCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHH
ELTEGVLRVRNWP
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]