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The map label for this gene is ycfJ [H]

Identifier: 156977783

GI number: 156977783

Start: 1720799

End: 1721317

Strand: Reverse

Name: ycfJ [H]

Synonym: VIBHAR_06571

Alternate gene names: 156977783

Gene position: 1721317-1720799 (Counterclockwise)

Preceding gene: 156977784

Following gene: 156977780

Centisome position: 78.1

GC content: 48.36

Gene sequence:

>519_bases
ATGAATATGAAATCTATCGCAATCGCTGCAGCCGTTGTTACTGTACTAGCAGGCTGTAAAGATAAGACGCCACCGGCACC
AACAGAAGCGAACATTACGCTTGTTGAAGCGGTAACTGAAACAGTGAAGAACCCACACCAAGTGTGTAAAGACGTGGTTG
TGACTCACCAAGTTGCACCAAAGGATAACAACAAGATCCTTGGCACGGTCGGTGGTGCAGCAGCAGGTGCTGCGTTAGGT
AACCAAATTGGTGGCGGTTCAGGTAAAGTGATTGCAACGGCGGCAGGTACTATCGCGGGTGCAATGGCGGGTCGCGAAAT
CCAAGACAATGTTCAGAAGGGTGATGTTGTAACATCAACTGAGAAGCAATGTCATACAGAGTACACGACTTCTGAAAAAG
TAGTCGGTTACGATGTCACTTACGAGGTTGCTGGTGCGCCAACCACGGTTCGTATGAAGAGCAAGCCTGCAGGCAAGACA
TTCCAAATTCAAGATGGCAAAGTGGTTCTACCGCAATAA

Upstream 100 bases:

>100_bases
TAACCTGCTAATGACAGAAGGCTTAATTTGACCTGATGTGAATTTCAGCCCGCGATTTACTATACCGCCAAGCAAAGATA
ACTGTACTGGGAAGTAATCC

Downstream 100 bases:

>100_bases
TCGCCAACAAACTTGAATGTAAAAGCCCTTTGCTTAAGCGAGCAAAGGGCTTTTTTGATCATGCAGTGATTACTTCTCGA
CAAAATAGTCGATTAAGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MNMKSIAIAAAVVTVLAGCKDKTPPAPTEANITLVEAVTETVKNPHQVCKDVVVTHQVAPKDNNKILGTVGGAAAGAALG
NQIGGGSGKVIATAAGTIAGAMAGREIQDNVQKGDVVTSTEKQCHTEYTTSEKVVGYDVTYEVAGAPTTVRMKSKPAGKT
FQIQDGKVVLPQ

Sequences:

>Translated_172_residues
MNMKSIAIAAAVVTVLAGCKDKTPPAPTEANITLVEAVTETVKNPHQVCKDVVVTHQVAPKDNNKILGTVGGAAAGAALG
NQIGGGSGKVIATAAGTIAGAMAGREIQDNVQKGDVVTSTEKQCHTEYTTSEKVVGYDVTYEVAGAPTTVRMKSKPAGKT
FQIQDGKVVLPQ
>Mature_172_residues
MNMKSIAIAAAVVTVLAGCKDKTPPAPTEANITLVEAVTETVKNPHQVCKDVVVTHQVAPKDNNKILGTVGGAAAGAALG
NQIGGGSGKVIATAAGTIAGAMAGREIQDNVQKGDVVTSTEKQCHTEYTTSEKVVGYDVTYEVAGAPTTVRMKSKPAGKT
FQIQDGKVVLPQ

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=145, Percent_Identity=40, Blast_Score=120, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 17585; Mature: 17585

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKSIAIAAAVVTVLAGCKDKTPPAPTEANITLVEAVTETVKNPHQVCKDVVVTHQVAP
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHCCCC
KDNNKILGTVGGAAAGAALGNQIGGGSGKVIATAAGTIAGAMAGREIQDNVQKGDVVTST
CCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCCCHHHHHHCCCCEEECC
EKQCHTEYTTSEKVVGYDVTYEVAGAPTTVRMKSKPAGKTFQIQDGKVVLPQ
HHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCEEEEECCEEECCC
>Mature Secondary Structure
MNMKSIAIAAAVVTVLAGCKDKTPPAPTEANITLVEAVTETVKNPHQVCKDVVVTHQVAP
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHCCCC
KDNNKILGTVGGAAAGAALGNQIGGGSGKVIATAAGTIAGAMAGREIQDNVQKGDVVTST
CCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCCCHHHHHHCCCCEEECC
EKQCHTEYTTSEKVVGYDVTYEVAGAPTTVRMKSKPAGKTFQIQDGKVVLPQ
HHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]