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The map label for this gene is ydgC [H]

Identifier: 156977784

GI number: 156977784

Start: 1721617

End: 1721886

Strand: Reverse

Name: ydgC [H]

Synonym: VIBHAR_06572

Alternate gene names: 156977784

Gene position: 1721886-1721617 (Counterclockwise)

Preceding gene: 156977785

Following gene: 156977783

Centisome position: 78.12

GC content: 45.19

Gene sequence:

>270_bases
ATGACGAGTCTCTTTCTTAAATCTTTACTCGGTGCGGGCGCAGTGTTGATCATTGCTATGCTGTCGAAGTCGAAAAGTTT
CTACGTCGCGGGTTTGGTGCCATTATTTCCAACTTTTGCGTTGATCGCTCATTTTATTGTGGGCAGTGAGCGAGATATGG
AAGCCTTGCGGCAAACGGCACTGTTCGGTATCTATTCTCTTATTCCTTATGCCGCGAATCTGATTTCAGTCTTCTATTTT
AGCTATCGCTTGAGCTTGGTTGGCACATGA

Upstream 100 bases:

>100_bases
CTTTATGTTTATGCACTTACGTAGCCTTAGCCATCGTCATAAGTATCTCACGGATGATGAATTGCTTTTAAGTTTGGCTT
AAGCATTCTGGAAAAATCGG

Downstream 100 bases:

>100_bases
ACAGCGGCGACACTTGTTTGGGTTATGTTCGCTTCGATGTTGCTTGCATTTTTGGACGCGATGGATGGTGCCTGCGTAAT
TATTACCCATCCTTACAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MTSLFLKSLLGAGAVLIIAMLSKSKSFYVAGLVPLFPTFALIAHFIVGSERDMEALRQTALFGIYSLIPYAANLISVFYF
SYRLSLVGT

Sequences:

>Translated_89_residues
MTSLFLKSLLGAGAVLIIAMLSKSKSFYVAGLVPLFPTFALIAHFIVGSERDMEALRQTALFGIYSLIPYAANLISVFYF
SYRLSLVGT
>Mature_88_residues
TSLFLKSLLGAGAVLIIAMLSKSKSFYVAGLVPLFPTFALIAHFIVGSERDMEALRQTALFGIYSLIPYAANLISVFYFS
YRLSLVGT

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=78, Percent_Identity=57.6923076923077, Blast_Score=99, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 9715; Mature: 9584

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLFLKSLLGAGAVLIIAMLSKSKSFYVAGLVPLFPTFALIAHFIVGSERDMEALRQTA
CHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LFGIYSLIPYAANLISVFYFSYRLSLVGT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSLFLKSLLGAGAVLIIAMLSKSKSFYVAGLVPLFPTFALIAHFIVGSERDMEALRQTA
HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LFGIYSLIPYAANLISVFYFSYRLSLVGT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]