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The map label for this gene is ybcM [H]

Identifier: 156977553

GI number: 156977553

Start: 1508977

End: 1509759

Strand: Reverse

Name: ybcM [H]

Synonym: VIBHAR_06341

Alternate gene names: 156977553

Gene position: 1509759-1508977 (Counterclockwise)

Preceding gene: 156977554

Following gene: 156977549

Centisome position: 68.5

GC content: 43.3

Gene sequence:

>783_bases
ATGAGTCATCAATATCAAATTACGATATTTCGTGCAGAGCAGTTACAGAAGCTGCGCAATGTGAGGATTCATTCCCCAAG
CATTATTCAGATCATTACGGGTAGTAAGCGCCTTTTCTGGAAGGAATCGGCGCTGGATATTTCCCATTCTGAATTACTAC
TTTGCGAAGCTTCTGCATCACTGAGCTTTGAGAACTTGCCACAGAAAGGGAAGTTTCTCTCCAGAATGTTTAGCTTCCAT
TGCTTACCGACGGACGCAATGCTTGAATTGAGCATGCGTGTCGGAACAGGGGATGAATCGCCGAGATTAGCTGCAGATAA
CTCGTTACATGAGACGTTAAACGCGCTGTATGCTTTTGAACAACATGGTATGAGAAAAGAGACACAAACTTTTTGGGTCA
TGGGTTTATATCAGCAGCTTGCGGAACGTGGAGCATTACACCACCTGTTTGTTAGCTCAAACATCACATTCAGCCAAAAA
TTGAGTCGTTACTTATCCTTCTCTCCTGGTGAAGAACATTCGTTGGAAGAGGCTGCTGAACGATTTGCCATGAGCCGGGC
AACCATGATCCGTAAACTCAAGCAAGAAGGGACTCAATATCGAGAGGTGTTGGCAGAAGTACGTTTAAATCATGCATTGT
ATTTAATGCAAAATGGCCACTATAACGTTGCGATGTTGGCTCAACTTTGTGGCTATCAATCGGAAGGTCGTTTTAGTCAG
CGTTTTAAAGGTAAATTCGGTCTTACCCCGAGTGATTACATCAAAACGGTGGTGATAAATTAA

Upstream 100 bases:

>100_bases
GTGGTTGGCTTTACACTAAATAGCATGGCGCTAGACAAAGCAAAACTGACGGCAACTTACACGCGCTAAGGTGCGACAGA
GGCGAAAGCAAGGGGAAATA

Downstream 100 bases:

>100_bases
GCCGAACCTTGGAAAGTGGCCTATGCGCGCTTGACCGGACGGAATGATGGTGAAGCGGAAGAATCTGCGACAGCTAAATC
CGATAGAAGCTGTTGTAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSHQYQITIFRAEQLQKLRNVRIHSPSIIQIITGSKRLFWKESALDISHSELLLCEASASLSFENLPQKGKFLSRMFSFH
CLPTDAMLELSMRVGTGDESPRLAADNSLHETLNALYAFEQHGMRKETQTFWVMGLYQQLAERGALHHLFVSSNITFSQK
LSRYLSFSPGEEHSLEEAAERFAMSRATMIRKLKQEGTQYREVLAEVRLNHALYLMQNGHYNVAMLAQLCGYQSEGRFSQ
RFKGKFGLTPSDYIKTVVIN

Sequences:

>Translated_260_residues
MSHQYQITIFRAEQLQKLRNVRIHSPSIIQIITGSKRLFWKESALDISHSELLLCEASASLSFENLPQKGKFLSRMFSFH
CLPTDAMLELSMRVGTGDESPRLAADNSLHETLNALYAFEQHGMRKETQTFWVMGLYQQLAERGALHHLFVSSNITFSQK
LSRYLSFSPGEEHSLEEAAERFAMSRATMIRKLKQEGTQYREVLAEVRLNHALYLMQNGHYNVAMLAQLCGYQSEGRFSQ
RFKGKFGLTPSDYIKTVVIN
>Mature_259_residues
SHQYQITIFRAEQLQKLRNVRIHSPSIIQIITGSKRLFWKESALDISHSELLLCEASASLSFENLPQKGKFLSRMFSFHC
LPTDAMLELSMRVGTGDESPRLAADNSLHETLNALYAFEQHGMRKETQTFWVMGLYQQLAERGALHHLFVSSNITFSQKL
SRYLSFSPGEEHSLEEAAERFAMSRATMIRKLKQEGTQYREVLAEVRLNHALYLMQNGHYNVAMLAQLCGYQSEGRFSQR
FKGKFGLTPSDYIKTVVIN

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=253, Percent_Identity=24.5059288537549, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786776, Length=137, Percent_Identity=26.2773722627737, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786778, Length=64, Percent_Identity=39.0625, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29834; Mature: 29702

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHQYQITIFRAEQLQKLRNVRIHSPSIIQIITGSKRLFWKESALDISHSELLLCEASAS
CCCEEEEEEEEHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCC
LSFENLPQKGKFLSRMFSFHCLPTDAMLELSMRVGTGDESPRLAADNSLHETLNALYAFE
CCHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHH
QHGMRKETQTFWVMGLYQQLAERGALHHLFVSSNITFSQKLSRYLSFSPGEEHSLEEAAE
HCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHH
RFAMSRATMIRKLKQEGTQYREVLAEVRLNHALYLMQNGHYNVAMLAQLCGYQSEGRFSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCHHH
RFKGKFGLTPSDYIKTVVIN
HHCCCCCCCHHHHHEEEECC
>Mature Secondary Structure 
SHQYQITIFRAEQLQKLRNVRIHSPSIIQIITGSKRLFWKESALDISHSELLLCEASAS
CCEEEEEEEEHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCC
LSFENLPQKGKFLSRMFSFHCLPTDAMLELSMRVGTGDESPRLAADNSLHETLNALYAFE
CCHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHH
QHGMRKETQTFWVMGLYQQLAERGALHHLFVSSNITFSQKLSRYLSFSPGEEHSLEEAAE
HCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHH
RFAMSRATMIRKLKQEGTQYREVLAEVRLNHALYLMQNGHYNVAMLAQLCGYQSEGRFSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCHHH
RFKGKFGLTPSDYIKTVVIN
HHCCCCCCCHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]