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The map label for this gene is secF [H]

Identifier: 156976588

GI number: 156976588

Start: 592253

End: 593155

Strand: Direct

Name: secF [H]

Synonym: VIBHAR_05362

Alternate gene names: 156976588

Gene position: 592253-593155 (Clockwise)

Preceding gene: 156976587

Following gene: 156976591

Centisome position: 26.87

GC content: 46.29

Gene sequence:

>903_bases
ATGGTCGAAATGCTAAAACAAAATATCCGTAAGATTCGTTACTTCACGACTGCTGTATCGGTAGTTCTAACGATTATTGC
TCTTGTTGCTCTGGGAATGAAAGGGCTTAACCTAGGTCTAGACTTCACTGGTGGTATGGTTACTGAAGTGAAAGTCGATA
AACAATTGACTAACTATGATCTGCTTAACGCACTTCAACCAAAGCTTGGCGAATCAACATCAGTCACGCGTTCAGGTGAA
GATGGCCGTTGGGTGATTCGTTACTCTGCACCTGCAGAAGGTCAAACACTACCGAGCGTAGCAGATGTGCTTAAACCAAT
CTCACACCAAGTTGATGTGGTAAGTAACAGCATCGTTGGTGCTCAAGTAGGTCAAGATCTGTTTGATCAAGGTGGTTTAG
CACTATTGATTTCAGTACTGACGATTCTTGGTTACTTGTGTTTCCGCTTTGAGTGGCGTTTGGCAAGTGGTTCGCTGTTT
GCTCTGGCACACGACGTTATCTTAGTCCTCGGCTTCTTTGCAATCACGCAAATGGAGTTCAACCTAACGGTGTTTGCGGC
GATTCTGGCAATTCTTGGCTACTCGTTGAATGACTCGATCATCATCGCAGACCGCATTCGTGAACTGCTGGTGGCTAAGC
AAAACTGGAAAACAGAGCAAATCAACGACGAAGCAGTACTGGCGACATTCTCACGTACTATGGTGACGTCAGGTACTACT
CTGATCACCGTTGGCGCGCTGTGGATTATGGGCGGCTCAGCTTTGGCTGGCTTCTCGACTGCAATGTTTATCGGCGTACT
ATCTGGTACGTGGTCATCTATCTCGATTGGTACGGTGCTTCCTGAATGGTTGAAGCTAGAACCAAAACACTACCTACCAG
TAGAGATCGACACTGCACCATAA

Upstream 100 bases:

>100_bases
TGGGTCTGATGACCAGTATGTTTACAGGCGTATTCGCTTCTCGTGCAATGATCAATTTAATTTGGGGCCGCGATGGCCGT
CGTGATGTGAGGGTTTAATC

Downstream 100 bases:

>100_bases
TACTTGGTGTGTAAGGTAAAAGTGCTTGCGCCACTCAATTTGAGTGGCGCTTTTTTATCTAGAGAAACGAGAAACGAGAA
ACGAGAAACGAGAAACGAGA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MVEMLKQNIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNYDLLNALQPKLGESTSVTRSGE
DGRWVIRYSAPAEGQTLPSVADVLKPISHQVDVVSNSIVGAQVGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLF
ALAHDVILVLGFFAITQMEFNLTVFAAILAILGYSLNDSIIIADRIRELLVAKQNWKTEQINDEAVLATFSRTMVTSGTT
LITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLKLEPKHYLPVEIDTAP

Sequences:

>Translated_300_residues
MVEMLKQNIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNYDLLNALQPKLGESTSVTRSGE
DGRWVIRYSAPAEGQTLPSVADVLKPISHQVDVVSNSIVGAQVGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLF
ALAHDVILVLGFFAITQMEFNLTVFAAILAILGYSLNDSIIIADRIRELLVAKQNWKTEQINDEAVLATFSRTMVTSGTT
LITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLKLEPKHYLPVEIDTAP
>Mature_300_residues
MVEMLKQNIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNYDLLNALQPKLGESTSVTRSGE
DGRWVIRYSAPAEGQTLPSVADVLKPISHQVDVVSNSIVGAQVGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLF
ALAHDVILVLGFFAITQMEFNLTVFAAILAILGYSLNDSIIIADRIRELLVAKQNWKTEQINDEAVLATFSRTMVTSGTT
LITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLKLEPKHYLPVEIDTAP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=290, Percent_Identity=39.3103448275862, Blast_Score=191, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32527; Mature: 32527

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEMLKQNIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNYD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEECHHHHHHH
LLNALQPKLGESTSVTRSGEDGRWVIRYSAPAEGQTLPSVADVLKPISHQVDVVSNSIVG
HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
AQVGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
NLTVFAAILAILGYSLNDSIIIADRIRELLVAKQNWKTEQINDEAVLATFSRTMVTSGTT
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCH
LITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLKLEPKHYLPVEIDTAP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEHHHHCHHHHCCCCCCCCCEEECCCC
>Mature Secondary Structure
MVEMLKQNIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNYD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEECHHHHHHH
LLNALQPKLGESTSVTRSGEDGRWVIRYSAPAEGQTLPSVADVLKPISHQVDVVSNSIVG
HHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
AQVGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
NLTVFAAILAILGYSLNDSIIIADRIRELLVAKQNWKTEQINDEAVLATFSRTMVTSGTT
HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCH
LITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLKLEPKHYLPVEIDTAP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEHHHHCHHHHCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]