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The map label for this gene is secD [H]

Identifier: 156976587

GI number: 156976587

Start: 590412

End: 592250

Strand: Direct

Name: secD [H]

Synonym: VIBHAR_05361

Alternate gene names: 156976587

Gene position: 590412-592250 (Clockwise)

Preceding gene: 156976586

Following gene: 156976588

Centisome position: 26.79

GC content: 48.45

Gene sequence:

>1839_bases
ATGAAGAAAACACCAAAACCACAAAAGAACAGAAAAGTGCTGAATCATTACTCAGCATGGAAATACGTCGTACTTATTAC
GACCGTTATTATTTTAACCTTGAGCGCGATCCCAACCTGGTTTGGTGAGCAGCCTTCTATTCAGGTCACGTTTGCTGACC
AAAGCAACAGTGCGATGTCAGTGGTCCAGCTAGACCAACTGTTGAAAACGCATCATATTCCTGCGTCTAAGATCATTGAG
AAAGACGGAAAAACCACCATCGTTTTTGATGGCGAAGACGCGCAAAGTAAAGCACGCGCATTGCTTAACGAGCAGCTAGA
CAAAGACGACAGCATTACGTTCTCTTACGTTTCTGTTGCACCTGAATGGTTGAATGAAATGGGCTTTAGCCCGATCAAAC
TTGGTCTTGACCTTCGTGGCGGCGTGCAATTCCTACTAAACGTAGATGTGAACAAAGCGTTCGAGGAACAACGTGATGCA
TTGGTTGATGAGATCAAAGCAAATCTGCGTGAAGAGCGTATTCGCGGTGTTCAAGTTCGTGCAGAGGCGCACAACCACAT
CGCAGTAAACAGCGAGAACGAAGCGGGTCTCAAAGCGGCAAGCCAATTCATTCGTCAAAACTACCCTGGTTGGACAATGA
CTGGCTCAGATCGCGGCTTTGAGCTTCAGCCAAGTGAACAGAACATCCAAGAATTCCAAACCACAACACTTCAACAAAAC
TTGAAGATCATGCGTGGTCGTATCGAAGAGCTGGGTATTACAGAAGCGTTGGTTCAACGCCAAGGCAAAGAGAGTATCCG
TATTGAGCTTCCAGGTGTTCAAGATCCAGCACAAGCGAAAAACGTTATCGGTGCAACAGCCAGCCTTGCGTTCTATGAAG
TAAAAGACGCAGGTCAAGCTCGTAGTAGCCAAGACCTTGTATTGAAAGACAACGACGGTCGTACAGTAATTCTGACTAAG
CGCCCAGTATTAACGGGTGAGCACATTGTAAACGCACGTGCTGGCGTCGACAAAATGGGTATGTCAGAAGTAAACATCTC
TCTAGACCACGCGGGTGGCAAGAAGATGAGTGACTTCTCTGCAACACACATCGGCAAACCAATGGCGACCGTATACCGCG
AGTACAAAACGGACGAACGTGGTATGACAGAGCGTAGTGAGCGTGTCATCAGTGTAGCAACTATCCAGTCTCAACTTGGT
AGCCAATTCCGCATCACAGGTGCGGGTAGCATGGATGAAGCACAACAGCTTGCGCTGCTTCTGCGTGCGGGCTCTCTAAC
AGCGCCAGTGACGATCGTTGAAGAACGTACAATTGGTGCATCTCTAGGTGCAGAAAACATCCAAAACGGTTTTGCTGCTC
TAGCACTAGGTATGGGTCTAACCCTGACATTTATGGCGCTTTGGTACCGTCGTCTTGGTTGGGTCGCGAACGTGGCTTTG
TGTGCAAACATGCTTTGCTTGCTTGGTCTAATCGCACTGCTTCCTGGCGCCGTGCTAACGCTTCCTGGTATTGCTGGTTT
GGTTCTGACTGTCGGTATGGCGGTGGATACCAACGTGATTATCTTTGAACGCATCAAAGACAAAATGCGTGAAGGCCGCA
GCTTCGCTCAAGCGATCGACCTCGGCTTCGACAGTGCATTCGCAACTATCCTTGATGCCAACATCACCACCATGATCACT
GCTGTGATTCTATACGCGATTGGTAACGGTCCAATCCAAGGCTTCGCGCTAACGCTAGGCTTGGGTCTGATGACCAGTAT
GTTTACAGGCGTATTCGCTTCTCGTGCAATGATCAATTTAATTTGGGGCCGCGATGGCCGTCGTGATGTGAGGGTTTAA

Upstream 100 bases:

>100_bases
CTGGGCATTCTGTACCTGCATATCGTTCAGGTAAGCGTTTTGTCGTGTCTTGAATTTAATTATTTAAAGCTTCACTGCTC
AGTGAAGGGATGATGTTTAC

Downstream 100 bases:

>100_bases
TCATGGTCGAAATGCTAAAACAAAATATCCGTAAGATTCGTTACTTCACGACTGCTGTATCGGTAGTTCTAACGATTATT
GCTCTTGTTGCTCTGGGAAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 612; Mature: 612

Protein sequence:

>612_residues
MKKTPKPQKNRKVLNHYSAWKYVVLITTVIILTLSAIPTWFGEQPSIQVTFADQSNSAMSVVQLDQLLKTHHIPASKIIE
KDGKTTIVFDGEDAQSKARALLNEQLDKDDSITFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDA
LVDEIKANLREERIRGVQVRAEAHNHIAVNSENEAGLKAASQFIRQNYPGWTMTGSDRGFELQPSEQNIQEFQTTTLQQN
LKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAKNVIGATASLAFYEVKDAGQARSSQDLVLKDNDGRTVILTK
RPVLTGEHIVNARAGVDKMGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQLG
SQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWYRRLGWVANVAL
CANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMIT
AVILYAIGNGPIQGFALTLGLGLMTSMFTGVFASRAMINLIWGRDGRRDVRV

Sequences:

>Translated_612_residues
MKKTPKPQKNRKVLNHYSAWKYVVLITTVIILTLSAIPTWFGEQPSIQVTFADQSNSAMSVVQLDQLLKTHHIPASKIIE
KDGKTTIVFDGEDAQSKARALLNEQLDKDDSITFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDA
LVDEIKANLREERIRGVQVRAEAHNHIAVNSENEAGLKAASQFIRQNYPGWTMTGSDRGFELQPSEQNIQEFQTTTLQQN
LKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAKNVIGATASLAFYEVKDAGQARSSQDLVLKDNDGRTVILTK
RPVLTGEHIVNARAGVDKMGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQLG
SQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWYRRLGWVANVAL
CANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMIT
AVILYAIGNGPIQGFALTLGLGLMTSMFTGVFASRAMINLIWGRDGRRDVRV
>Mature_612_residues
MKKTPKPQKNRKVLNHYSAWKYVVLITTVIILTLSAIPTWFGEQPSIQVTFADQSNSAMSVVQLDQLLKTHHIPASKIIE
KDGKTTIVFDGEDAQSKARALLNEQLDKDDSITFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDA
LVDEIKANLREERIRGVQVRAEAHNHIAVNSENEAGLKAASQFIRQNYPGWTMTGSDRGFELQPSEQNIQEFQTTTLQQN
LKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAKNVIGATASLAFYEVKDAGQARSSQDLVLKDNDGRTVILTK
RPVLTGEHIVNARAGVDKMGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQLG
SQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWYRRLGWVANVAL
CANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMIT
AVILYAIGNGPIQGFALTLGLGLMTSMFTGVFASRAMINLIWGRDGRRDVRV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=612, Percent_Identity=41.3398692810458, Blast_Score=486, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66922; Mature: 66922

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTPKPQKNRKVLNHYSAWKYVVLITTVIILTLSAIPTWFGEQPSIQVTFADQSNSAMS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH
VVQLDQLLKTHHIPASKIIEKDGKTTIVFDGEDAQSKARALLNEQLDKDDSITFSYVSVA
HHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEHHC
PEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALVDEIKANLREERIRGVQVR
HHHHHHCCCCEEEECEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
AEAHNHIAVNSENEAGLKAASQFIRQNYPGWTMTGSDRGFELQPSEQNIQEFQTTTLQQN
EECCCEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
LKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAKNVIGATASLAFYEVKDAGQA
HHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCC
RSSQDLVLKDNDGRTVILTKRPVLTGEHIVNARAGVDKMGMSEVNISLDHAGGKKMSDFS
CCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCC
ATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQLGSQFRITGAGSMDEAQQLALL
HHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
LRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWYRRLGWVANVAL
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDKMREGRSFAQAID
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
LGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMTSMFTGVFASRAMINL
CCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWGRDGRRDVRV
EECCCCCCCCCC
>Mature Secondary Structure
MKKTPKPQKNRKVLNHYSAWKYVVLITTVIILTLSAIPTWFGEQPSIQVTFADQSNSAMS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHH
VVQLDQLLKTHHIPASKIIEKDGKTTIVFDGEDAQSKARALLNEQLDKDDSITFSYVSVA
HHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEHHC
PEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALVDEIKANLREERIRGVQVR
HHHHHHCCCCEEEECEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
AEAHNHIAVNSENEAGLKAASQFIRQNYPGWTMTGSDRGFELQPSEQNIQEFQTTTLQQN
EECCCEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
LKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAKNVIGATASLAFYEVKDAGQA
HHHHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCC
RSSQDLVLKDNDGRTVILTKRPVLTGEHIVNARAGVDKMGMSEVNISLDHAGGKKMSDFS
CCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCC
ATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQLGSQFRITGAGSMDEAQQLALL
HHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
LRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWYRRLGWVANVAL
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDKMREGRSFAQAID
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
LGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMTSMFTGVFASRAMINL
CCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWGRDGRRDVRV
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]