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The map label for this gene is rpl10e [H]

Identifier: 156937789

GI number: 156937789

Start: 889433

End: 889954

Strand: Reverse

Name: rpl10e [H]

Synonym: Igni_0999

Alternate gene names: 156937789

Gene position: 889954-889433 (Counterclockwise)

Preceding gene: 156937796

Following gene: 156937788

Centisome position: 68.59

GC content: 56.9

Gene sequence:

>522_bases
GTGGCCAAGCCCGCGCGCTGTTTCACCAAGAGGCACGCGAAGGGGTTTAGCGGCCCTCCCTACACTAGGCACGAATACAT
ACACGGAATCCCCCAACCAAAGGTAGTCAAGTGGGTAATGGGCAACCCCCACGTAGACGCGGACGTGGAAGTGAGGCTGG
TCGCCTTGGAGAGAGCCCAAGTGAGGCACAACGCCTTGGAAGCCGCGAGGGTAATGGTACACAAGAACTTGTCCAGCGAC
ATAGGGGAGAGCAACTACGTGTTCATAATAAAGAGGTATCCCCACCACGTGCTCAGGGAGCACAAGTTCATGGCCTTCGC
CGGCGCCGACAGGCTGCAAGAGGGTATGAGGCACGCCTTCGGCAAGCCCGCCGGACTGGCTGCGAGAATCTACCCGGGGA
TGGACATCCTCGTCGTGAGGACCAAGAAGCAGTACGTCGATAAGGTTAAGGAAGCCTTGAAGATAGCCGCTTCCAAGATG
CCGATGCCTTGTAGGATAGAAGTGGTAGAACTCAAGAAGTGA

Upstream 100 bases:

>100_bases
CATTCCTTGGACCCTTATGGTGTGTTGTGAAGCTCTTTAAAGGTTTGGACGCTGGAGCAGATTTTTATTCCCGTCGGCTA
AGGGCCCGAGGGTCCGAGCG

Downstream 100 bases:

>100_bases
GCTCCCTTGAGGTACGTCCTAGATGAGGAAAAGGTAAAGGCTTTTATAAAGGAGGTCAAGCCCTCCAAGGTCCTAGTCGA
GGCCCCTCCCGGCCTCTTCA

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MAKPARCFTKRHAKGFSGPPYTRHEYIHGIPQPKVVKWVMGNPHVDADVEVRLVALERAQVRHNALEAARVMVHKNLSSD
IGESNYVFIIKRYPHHVLREHKFMAFAGADRLQEGMRHAFGKPAGLAARIYPGMDILVVRTKKQYVDKVKEALKIAASKM
PMPCRIEVVELKK

Sequences:

>Translated_173_residues
MAKPARCFTKRHAKGFSGPPYTRHEYIHGIPQPKVVKWVMGNPHVDADVEVRLVALERAQVRHNALEAARVMVHKNLSSD
IGESNYVFIIKRYPHHVLREHKFMAFAGADRLQEGMRHAFGKPAGLAARIYPGMDILVVRTKKQYVDKVKEALKIAASKM
PMPCRIEVVELKK
>Mature_172_residues
AKPARCFTKRHAKGFSGPPYTRHEYIHGIPQPKVVKWVMGNPHVDADVEVRLVALERAQVRHNALEAARVMVHKNLSSDI
GESNYVFIIKRYPHHVLREHKFMAFAGADRLQEGMRHAFGKPAGLAARIYPGMDILVVRTKKQYVDKVKEALKIAASKMP
MPCRIEVVELKK

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family [H]

Homologues:

Organism=Homo sapiens, GI223890243, Length=162, Percent_Identity=37.037037037037, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI18152783, Length=162, Percent_Identity=37.037037037037, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17533037, Length=162, Percent_Identity=35.1851851851852, Blast_Score=100, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6323104, Length=162, Percent_Identity=38.8888888888889, Blast_Score=104, Evalue=8e-24,
Organism=Drosophila melanogaster, GI221513696, Length=162, Percent_Identity=38.2716049382716, Blast_Score=104, Evalue=2e-23,
Organism=Drosophila melanogaster, GI221513692, Length=162, Percent_Identity=38.2716049382716, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255 [H]

Pfam domain/function: PF00252 Ribosomal_L16 [H]

EC number: NA

Molecular weight: Translated: 19672; Mature: 19541

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPARCFTKRHAKGFSGPPYTRHEYIHGIPQPKVVKWVMGNPHVDADVEVRLVALERAQ
CCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEHHHHH
VRHNALEAARVMVHKNLSSDIGESNYVFIIKRYPHHVLREHKFMAFAGADRLQEGMRHAF
HHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCHHHHHHHHHHEECCHHHHHHHHHHHC
GKPAGLAARIYPGMDILVVRTKKQYVDKVKEALKIAASKMPMPCRIEVVELKK
CCCCCCEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure 
AKPARCFTKRHAKGFSGPPYTRHEYIHGIPQPKVVKWVMGNPHVDADVEVRLVALERAQ
CCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEHHHHH
VRHNALEAARVMVHKNLSSDIGESNYVFIIKRYPHHVLREHKFMAFAGADRLQEGMRHAF
HHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCHHHHHHHHHHEECCHHHHHHHHHHHC
GKPAGLAARIYPGMDILVVRTKKQYVDKVKEALKIAASKMPMPCRIEVVELKK
CCCCCCEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA