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The map label for this gene is abnA [H]

Identifier: 154687015

GI number: 154687015

Start: 2712571

End: 2713536

Strand: Reverse

Name: abnA [H]

Synonym: RBAM_025870

Alternate gene names: 154687015

Gene position: 2713536-2712571 (Counterclockwise)

Preceding gene: 154687016

Following gene: 154687014

Centisome position: 69.25

GC content: 49.38

Gene sequence:

>966_bases
ATGAAAAACAGATTCAGACGCATGATCCGCTTTTCGTGCGCAGCCGTTACAGCCGGGCTGCTGCTGATGTCTTCATCTCC
GGCATCTGCCGCGTTTTGGGGGGCATCAAATGAATTGCTGCACGATCCGACAATGGCGAAGGAAGGAAACACGTGGTACG
CTTTCGGAACCGGTTTGGAAGGGGAGAGGGGGCTTCGCGTCTTAAAGGCGGGCAGCGGCGGCGTATGGACCGTTCAGAAA
TCAATCTTTACTTCTCCGCTGTCATGGTGGGGCAATTATGTGCCGAATTACGGGCTGAATCAATGGGCCCCCGATGTTCA
ATATTTTAACGGAAAGTATTGGCTGTATTATGCCGTTTCTTCATTCGGCAAAAATACCTCCGCGATCGGTCTTGCATCAT
CTACAAGTCTCAGTTCGGGAAACTGGAAGGACGAAGGGCTCGTCATCCGTTCAACAAGCGCCGATAACTACAATGCAATT
GATCCGGAGCTGACAATTGATAAAGACGGAAACCCTTGGCTTGCCTTCGGTTCTTTTTGGAGCGGCATTAAGCTGACAAA
GCTTGATAAAAATACAATGAAACCGACGGGATCACTTTATTCCATCGCTGCCAGACCGAATAACGGCGGAGCTTTGGAAG
CGCCGGCCATCACCTACCAGAACGGCTACTATTACTTAATGGTGTCGTTTGATAAATGCTGTTCAGGCGTGAATAGTACG
TACAAAATCGCTTATGGAAGATCCAAAAGCATCACCGGCCCATATCTCGATAAAAGCGGGAAAAGCATGTCAGAAGGCGG
AGGAACGATTCTTGACTCCGGCAATGACCGCTGGAAAGGCCCGGGCGGTCAAGACATTGTGAACGGGAATATTTTAGTGC
GTCATGCGTATGATGCCGAAAACAGCGGAATTCCGAAGATGCTCATCAATGATATCGATTGGAGTTCAGGCTGGCCTTCC
TATTAA

Upstream 100 bases:

>100_bases
TGTCTGTACAAATATGAACCTTGCGTCTACAATAAGAGAAGACATAGAAAAATCTGACAACACGTTTTTGAAAGCGCTTT
AAAAAGGAGGGGGTTTACAA

Downstream 100 bases:

>100_bases
TTGATCAGCCGGGCATGTGTGTCCGGCTTTTTTACTTGCAATAAAAGATTGACAGTTTGATTCCTCCTTAACTATAATAA
AATTGTTCGTACAAATAAAA

Product: AbnA

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MKNRFRRMIRFSCAAVTAGLLLMSSSPASAAFWGASNELLHDPTMAKEGNTWYAFGTGLEGERGLRVLKAGSGGVWTVQK
SIFTSPLSWWGNYVPNYGLNQWAPDVQYFNGKYWLYYAVSSFGKNTSAIGLASSTSLSSGNWKDEGLVIRSTSADNYNAI
DPELTIDKDGNPWLAFGSFWSGIKLTKLDKNTMKPTGSLYSIAARPNNGGALEAPAITYQNGYYYLMVSFDKCCSGVNST
YKIAYGRSKSITGPYLDKSGKSMSEGGGTILDSGNDRWKGPGGQDIVNGNILVRHAYDAENSGIPKMLINDIDWSSGWPS
Y

Sequences:

>Translated_321_residues
MKNRFRRMIRFSCAAVTAGLLLMSSSPASAAFWGASNELLHDPTMAKEGNTWYAFGTGLEGERGLRVLKAGSGGVWTVQK
SIFTSPLSWWGNYVPNYGLNQWAPDVQYFNGKYWLYYAVSSFGKNTSAIGLASSTSLSSGNWKDEGLVIRSTSADNYNAI
DPELTIDKDGNPWLAFGSFWSGIKLTKLDKNTMKPTGSLYSIAARPNNGGALEAPAITYQNGYYYLMVSFDKCCSGVNST
YKIAYGRSKSITGPYLDKSGKSMSEGGGTILDSGNDRWKGPGGQDIVNGNILVRHAYDAENSGIPKMLINDIDWSSGWPS
Y
>Mature_321_residues
MKNRFRRMIRFSCAAVTAGLLLMSSSPASAAFWGASNELLHDPTMAKEGNTWYAFGTGLEGERGLRVLKAGSGGVWTVQK
SIFTSPLSWWGNYVPNYGLNQWAPDVQYFNGKYWLYYAVSSFGKNTSAIGLASSTSLSSGNWKDEGLVIRSTSADNYNAI
DPELTIDKDGNPWLAFGSFWSGIKLTKLDKNTMKPTGSLYSIAARPNNGGALEAPAITYQNGYYYLMVSFDKCCSGVNST
YKIAYGRSKSITGPYLDKSGKSMSEGGGTILDSGNDRWKGPGGQDIVNGNILVRHAYDAENSGIPKMLINDIDWSSGWPS
Y

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 34976; Mature: 34976

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRFRRMIRFSCAAVTAGLLLMSSSPASAAFWGASNELLHDPTMAKEGNTWYAFGTGLE
CCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCEECCCCCCCCCCEEEEEECCCC
GERGLRVLKAGSGGVWTVQKSIFTSPLSWWGNYVPNYGLNQWAPDVQYFNGKYWLYYAVS
CCCCEEEEEECCCCEEEEEHHHHCCCHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEEE
SFGKNTSAIGLASSTSLSSGNWKDEGLVIRSTSADNYNAIDPELTIDKDGNPWLAFGSFW
CCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCC
SGIKLTKLDKNTMKPTGSLYSIAARPNNGGALEAPAITYQNGYYYLMVSFDKCCSGVNST
CCEEEEEECCCCCCCCCCEEEEEECCCCCCEECCCEEEEECCEEEEEEEHHHHHCCCCCE
YKIAYGRSKSITGPYLDKSGKSMSEGGGTILDSGNDRWKGPGGQDIVNGNILVRHAYDAE
EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCEEEEEECCCC
NSGIPKMLINDIDWSSGWPSY
CCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MKNRFRRMIRFSCAAVTAGLLLMSSSPASAAFWGASNELLHDPTMAKEGNTWYAFGTGLE
CCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCEECCCCCCCCCCEEEEEECCCC
GERGLRVLKAGSGGVWTVQKSIFTSPLSWWGNYVPNYGLNQWAPDVQYFNGKYWLYYAVS
CCCCEEEEEECCCCEEEEEHHHHCCCHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEEE
SFGKNTSAIGLASSTSLSSGNWKDEGLVIRSTSADNYNAIDPELTIDKDGNPWLAFGSFW
CCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCC
SGIKLTKLDKNTMKPTGSLYSIAARPNNGGALEAPAITYQNGYYYLMVSFDKCCSGVNST
CCEEEEEECCCCCCCCCCEEEEEECCCCCCEECCCEEEEECCEEEEEEEHHHHHCCCCCE
YKIAYGRSKSITGPYLDKSGKSMSEGGGTILDSGNDRWKGPGGQDIVNGNILVRHAYDAE
EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCEEEEEECCCC
NSGIPKMLINDIDWSSGWPSY
CCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]