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The map label for this gene is ysdC [H]

Identifier: 154687016

GI number: 154687016

Start: 2713678

End: 2714763

Strand: Reverse

Name: ysdC [H]

Synonym: RBAM_025880

Alternate gene names: 154687016

Gene position: 2714763-2713678 (Counterclockwise)

Preceding gene: 154687018

Following gene: 154687015

Centisome position: 69.28

GC content: 47.97

Gene sequence:

>1086_bases
ATGACAAAATTAGATGAAACGCTCACCATGCTGAAAGCGTTAACGGATGCAAAAGGGATACCGGGAAATGAGAGAGAAGT
AAGACAAGTGATGAAATCATACATAGAACCATTTGCCGATGATGTCACAACAGACCGGCTGGGAAGCTTAATCGCCAAAA
AAACGGGCAAAGAAAACGGTCCGAAAATCATGATCTCAGGGCATTTAGATGAAGTCGGTTTTATGGTGACGCAAATCACT
GATAAAGGCTTTCTCCGCTTTCAAACCGTCGGCGGCTGGTGGTCTCAGGTCATGCTGGCCCAGCGCGTCACCGTCGTGAC
AAAAAAAGGGGACATCACGGGGATCATCGGTTCGAAACCGCCTCACATTCTGCCTCCTGACGCCAGAAAAAAAGCCGCCG
ATATTAAAGAGATGTTCATCGATATCGGGGCGTCCAGCCGTGAAGAAGCAATGGAATGGGGCGTTCTTCCGGGTGACCAG
ATTGTGCCGTATTTTGAATTTACAGTGATGAACAATGAAAAACATTTATTGGCGAAGGCATGGGACAACCGTATCGGCTG
CGCGATTGCCATCGATGTATTAAAAAATCTGAAAAACAGCGATCATCCGAATGAAGTATACGGGGTCGGAACGGTTCAGG
AAGAAGTCGGGCTTCGCGGGGCGAAAACAGCGGCACATACGATTCAGCCTGATATCGCGTTCGGTGTGGATGTCGGAATT
GCCGGAGATACACCGGGAATTTCTGAAAAAGAGGCGCAAAGCAAAATCGGCGAAGGGCCGCAAATTATTCTGTATGACGC
GTCAATGGTATCTCACAAAGGGCTGCGTGACCTTGTCGTGAACACGGCGGAAGAAGCGGGAATTCCGTATCAATTCGATT
CCATTGCCGGAGGGGGCACGGATTCAGGTTCCATTCACTTAACCGCAAACGGAGTGCCGGCGCTGTCCATTACGATCGCG
ACGCGCTACATTCATACTCATGCCGCTATTTTGCATCGGGATGATTATGAGAATACGGTAAAATTGATCACAGAAGTGAT
TAAAAAATTAGATCGGGAAACGGTTGACCGTATTACTTATCAATAA

Upstream 100 bases:

>100_bases
ATAGATAAAAACATTTACCCGTTTTTCAGGCGAATTAATCGTATGCTTCAGCATTGGTTTTGTATAATAAGAAGGATAGT
GAAAAAAAGGAGGTTTATTG

Downstream 100 bases:

>100_bases
AGATACGGAAGAATCTGCTTTTTTTAAGCAGATTCTTTTTTTGTCTGTACAAATATGAACCTTGCGTCTACAATAAGAGA
AGACATAGAAAAATCTGACA

Product: YsdC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTKLDETLTMLKALTDAKGIPGNEREVRQVMKSYIEPFADDVTTDRLGSLIAKKTGKENGPKIMISGHLDEVGFMVTQIT
DKGFLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKPPHILPPDARKKAADIKEMFIDIGASSREEAMEWGVLPGDQ
IVPYFEFTVMNNEKHLLAKAWDNRIGCAIAIDVLKNLKNSDHPNEVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGI
AGDTPGISEKEAQSKIGEGPQIILYDASMVSHKGLRDLVVNTAEEAGIPYQFDSIAGGGTDSGSIHLTANGVPALSITIA
TRYIHTHAAILHRDDYENTVKLITEVIKKLDRETVDRITYQ

Sequences:

>Translated_361_residues
MTKLDETLTMLKALTDAKGIPGNEREVRQVMKSYIEPFADDVTTDRLGSLIAKKTGKENGPKIMISGHLDEVGFMVTQIT
DKGFLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKPPHILPPDARKKAADIKEMFIDIGASSREEAMEWGVLPGDQ
IVPYFEFTVMNNEKHLLAKAWDNRIGCAIAIDVLKNLKNSDHPNEVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGI
AGDTPGISEKEAQSKIGEGPQIILYDASMVSHKGLRDLVVNTAEEAGIPYQFDSIAGGGTDSGSIHLTANGVPALSITIA
TRYIHTHAAILHRDDYENTVKLITEVIKKLDRETVDRITYQ
>Mature_360_residues
TKLDETLTMLKALTDAKGIPGNEREVRQVMKSYIEPFADDVTTDRLGSLIAKKTGKENGPKIMISGHLDEVGFMVTQITD
KGFLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKPPHILPPDARKKAADIKEMFIDIGASSREEAMEWGVLPGDQI
VPYFEFTVMNNEKHLLAKAWDNRIGCAIAIDVLKNLKNSDHPNEVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGIA
GDTPGISEKEAQSKIGEGPQIILYDASMVSHKGLRDLVVNTAEEAGIPYQFDSIAGGGTDSGSIHLTANGVPALSITIAT
RYIHTHAAILHRDDYENTVKLITEVIKKLDRETVDRITYQ

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=354, Percent_Identity=40.3954802259887, Blast_Score=284, Evalue=7e-78,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=34.6590909090909, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI87082417, Length=344, Percent_Identity=31.1046511627907, Blast_Score=174, Evalue=9e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39375; Mature: 39244

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLDETLTMLKALTDAKGIPGNEREVRQVMKSYIEPFADDVTTDRLGSLIAKKTGKENG
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
PKIMISGHLDEVGFMVTQITDKGFLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKP
CEEEEECCCHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHHEEEEECCCEEEECCCCC
PHILPPDARKKAADIKEMFIDIGASSREEAMEWGVLPGDQIVPYFEFTVMNNEKHLLAKA
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
WDNRIGCAIAIDVLKNLKNSDHPNEVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGI
HCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCCCCHHHHHCCCCCEECEEEEE
AGDTPGISEKEAQSKIGEGPQIILYDASMVSHKGLRDLVVNTAEEAGIPYQFDSIAGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCCC
DSGSIHLTANGVPALSITIATRYIHTHAAILHRDDYENTVKLITEVIKKLDRETVDRITY
CCCEEEEEECCCCEEEEEEEHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q
C
>Mature Secondary Structure 
TKLDETLTMLKALTDAKGIPGNEREVRQVMKSYIEPFADDVTTDRLGSLIAKKTGKENG
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
PKIMISGHLDEVGFMVTQITDKGFLRFQTVGGWWSQVMLAQRVTVVTKKGDITGIIGSKP
CEEEEECCCHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHHEEEEECCCEEEECCCCC
PHILPPDARKKAADIKEMFIDIGASSREEAMEWGVLPGDQIVPYFEFTVMNNEKHLLAKA
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
WDNRIGCAIAIDVLKNLKNSDHPNEVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGI
HCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCCCCHHHHHCCCCCEECEEEEE
AGDTPGISEKEAQSKIGEGPQIILYDASMVSHKGLRDLVVNTAEEAGIPYQFDSIAGGGT
CCCCCCCCHHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCCC
DSGSIHLTANGVPALSITIATRYIHTHAAILHRDDYENTVKLITEVIKKLDRETVDRITY
CCCEEEEEECCCCEEEEEEEHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]