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The map label for this gene is panD

Identifier: 154686488

GI number: 154686488

Start: 2157935

End: 2158318

Strand: Reverse

Name: panD

Synonym: RBAM_020560

Alternate gene names: 154686488

Gene position: 2158318-2157935 (Counterclockwise)

Preceding gene: 154686489

Following gene: 154686487

Centisome position: 55.08

GC content: 46.35

Gene sequence:

>384_bases
ATGTACCGCACTATGATGGCCGGAAAACTGCACCGCGCTACCGTGACGGAAGCCAATTTAAACTATGTCGGCAGCATTAC
GATTGATGAAGATCTTTTAGATGCCGTCGGAATGCTCGCTAATGAAAAAGTTCAGATTGTGAATAATAATAACGGAGCGA
GACTTGAAACGTATATTATTCCCGGTAAGCGGGGGAGCGGCGTCATCTGTTTAAACGGAGCAGCCGCCCGTCTCGTCCAA
GAAGGAGATAAAGTCATTATTATTTCTTATCAAATGATGTCTGATCAGGAAGCAAAAAGCCATCAGCCGAAGGTGGCCGT
TCTGGATGATCAGAATAAAATCGAGCAGATGCTGGGCCAGGAGCCGGCACACACGATTTTGTAA

Upstream 100 bases:

>100_bases
TTAAACGGCAAGGTCATTCTGGCCTGTGCCGTCCAATTTTCTAAAGCCAGACTGATTGATAATATCATTATTGATATTGA
TGAATGGGAGAGATCATAAT

Downstream 100 bases:

>100_bases
AAGAGCCCCCTTCATGGGGGTTTTCTTTTAAGATTTAGGGGCAAAAGCTGTTTTTCCGCTCCATTTCTCAACAAAACGTG
TTACACTTTTCTCGTATGCA

Product: aspartate alpha-decarboxylase

Products: NA

Alternate protein names: Aspartate alpha-decarboxylase

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MYRTMMAGKLHRATVTEANLNYVGSITIDEDLLDAVGMLANEKVQIVNNNNGARLETYIIPGKRGSGVICLNGAAARLVQ
EGDKVIIISYQMMSDQEAKSHQPKVAVLDDQNKIEQMLGQEPAHTIL

Sequences:

>Translated_127_residues
MYRTMMAGKLHRATVTEANLNYVGSITIDEDLLDAVGMLANEKVQIVNNNNGARLETYIIPGKRGSGVICLNGAAARLVQ
EGDKVIIISYQMMSDQEAKSHQPKVAVLDDQNKIEQMLGQEPAHTIL
>Mature_127_residues
MYRTMMAGKLHRATVTEANLNYVGSITIDEDLLDAVGMLANEKVQIVNNNNGARLETYIIPGKRGSGVICLNGAAARLVQ
EGDKVIIISYQMMSDQEAKSHQPKVAVLDDQNKIEQMLGQEPAHTIL

Specific function: Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine

COG id: COG0853

COG function: function code H; Aspartate 1-decarboxylase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the panD family

Homologues:

Organism=Escherichia coli, GI1786323, Length=122, Percent_Identity=47.5409836065574, Blast_Score=119, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PAND_BACA2 (A7Z5Z2)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421649.1
- ProteinModelPortal:   A7Z5Z2
- SMR:   A7Z5Z2
- STRING:   A7Z5Z2
- EnsemblBacteria:   EBBACT00000004848
- GeneID:   5461211
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_020560
- eggNOG:   COG0853
- GeneTree:   EBGT00050000002424
- HOGENOM:   HBG302821
- OMA:   LYSKIHR
- ProtClustDB:   PRK05449
- BioCyc:   BAMY326423:RBAM_020560-MONOMER
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00446
- InterPro:   IPR009010
- InterPro:   IPR003190
- Gene3D:   G3DSA:2.40.40.20
- PANTHER:   PTHR21012
- PIRSF:   PIRSF006246
- ProDom:   PD009294
- TIGRFAMs:   TIGR00223

Pfam domain/function: PF02261 Asp_decarbox; SSF50692 Asp_decarb_fold

EC number: =4.1.1.11

Molecular weight: Translated: 13910; Mature: 13910

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: ACT_SITE 25-25 ACT_SITE 58-58 BINDING 57-57

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRTMMAGKLHRATVTEANLNYVGSITIDEDLLDAVGMLANEKVQIVNNNNGARLETYII
CCCCCCCCCCEEEEEEECCCCEEEEEEECHHHHHHHHHHCCCEEEEEECCCCCEEEEEEE
PGKRGSGVICLNGAAARLVQEGDKVIIISYQMMSDQEAKSHQPKVAVLDDQNKIEQMLGQ
CCCCCCEEEEECCHHHHHHHCCCEEEEEEEEECCCCCHHCCCCEEEEECCHHHHHHHHCC
EPAHTIL
CCCCCCC
>Mature Secondary Structure
MYRTMMAGKLHRATVTEANLNYVGSITIDEDLLDAVGMLANEKVQIVNNNNGARLETYII
CCCCCCCCCCEEEEEEECCCCEEEEEEECHHHHHHHHHHCCCEEEEEECCCCCEEEEEEE
PGKRGSGVICLNGAAARLVQEGDKVIIISYQMMSDQEAKSHQPKVAVLDDQNKIEQMLGQ
CCCCCCEEEEECCHHHHHHHCCCEEEEEEEEECCCCCHHCCCCEEEEECCHHHHHHHHCC
EPAHTIL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA