| Definition | Bacillus amyloliquefaciens FZB42, complete genome. |
|---|---|
| Accession | NC_009725 |
| Length | 3,918,589 |
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The map label for this gene is dinG [H]
Identifier: 154686487
GI number: 154686487
Start: 2155027
End: 2157813
Strand: Reverse
Name: dinG [H]
Synonym: RBAM_020550
Alternate gene names: 154686487
Gene position: 2157813-2155027 (Counterclockwise)
Preceding gene: 154686488
Following gene: 154686486
Centisome position: 55.07
GC content: 47.18
Gene sequence:
>2787_bases ATGAACAAACAACGGTTCGTTGTCATAGATGTCGAAACAACAGGAAATTCGCCGAAAAAGGGCGATAAAATCATTCAAAT CGCAGCGGTTGTCATTGAAAATGGACAAATAACTGAGCGGTTTTCAAAATATATCAATCCGAATCAGGCCATCCCGCCGT TTATTGAACAGCTGACCGGAATATCGTCCGGAATGGTTGAAAATGAACTGCCGTTTGAAGCGGTCGCGGAGGAGATTTTT CATCTGCTTGACGGCGCGTATTTTGTTGCCCACAATATTCATTTCGACCTCGGATTTGTCCGGCATGAACTGAGCGAAGC GGGCTATGAGCTGCCGGATTGTGAAGTGCTTGATACGGTTGAGCTTTCGCGTATTGTTTTCCCGGGGTTTGAAGGATATA AGCTCGGTGAGTTGTGTGCGGAGCTGAATATTGTTCATGACCGCCCTCACCGCGCAGACAGCGATGCGGAGGTTACGGGA CTGGTCTTTTTAGACATTTTACATAAACTGAAACATTTGCCTTTACCGACATTAAAGCAGCTTAGAAGGCTTTCACAGCA TTTTATCAGCGATTTGACGCTGCTTTTGGATTCTTTTATACATGAAAGCAGGCCGGCGGAAGAAAAAAGCTGCATTCCAT ACGCCTCTTTTTCAATTAAAGAGCCCGATCACATTCCGGTTTCCCGTCCGGTGAATGCGGCCATTGACCTTGAAAAGTGG AACGAAGAAAAAGAACAGATCTTATCCGGCATCATCCCCCGCTATGAAAAGCGGAAAGGGCAGCTTTCGATGATGGATGA AGTGCTTGGCGCCTTCCGCAATCGGGAGCATGCGCTGATTGAAGCGGCACCCGGCATCGGAAAAACGATCGGTTATCTCG TTCCGGCTGTTTTATTTGCCAAAGCGGAGCAGACTCCCGTCATTATCAGCACGTACTCTACTCTTTTGCAGCAGCAGATC ATGTCTAAAGATCTTCCGCTTTTGGAGCGTATGTTTCCTTGGCCGGTCAAAGCCGCTATTTTAAAAGGGAAATCACATTA TCTGTGCCTGCCTAAGTTTGAACATATTCTGCATGAGGAAGATGACAACTATGATGCGGTTTTGACGAAAGCGCAGCTTC TCGTCTGGCTGACGGAGACTGAAACGGGCGACGCCGCTGAGCTGAATCTTCCATCAGGCGGCAGATTGCTGTGGGAGCGC ATGGCTTACGATGAGAATTCTTTTTTTAAAAAAGGGAAGGACTCGGCTGCCGGGTTTTATGAACGGGCTAAAGAAAAAGC GCAGGCCGCAGATCTGATTATCACAAACCATGCTTTGCTGTTTTCAGATCAAAGCAGTGAAACGAAAAAACTGCCTGCAA GCGGAACAATCATCATTGATGAAGCGCATCATTTCGAACGCGCCGCCAGCGAGCACCTGGGGAAGAGAGCTTCATACATC GGACTGCACACAAAGCTCAGCCGAATCGGAACCTTAAAGGAACACGGACTGTTAAAGCGGATGAGAAAACTGTTTTATAC GTATGAACTGCCGGCGGAAAGTTTTTTTGACGCCGATGAGTGGATGAAGCATATTCAATCGGAAAGCGACGCATTTTTCA GTTCAGTGCATTCTTTTGTCAAACGAAGAAAACCTAAAGACGATCTGAACCGTCTCGTTTATAGTCTCAATCATAAAAGC CAGGATAAAGGGTTTCACATGATAACGGACGGAGCGGAGCGGCTTTGTGCGATGCTGGATCAGCTGCTTGACATGTTTTC AGTACAGGAGAAACTGTTACATCAAAAGCTTGATCAGATGAAAAGCGGAGCGGCTTTTTTAGCGGCCGAATATGTAAAGT GTATCAGGGGGCTGAAAGAATATCGCGATACGTTCAGCAGGCTGCTGTTTGAAAATGATGAGAAAGAAGCCGTTTGGGTT GAAATTGACGCGAAGGGCGCAAAAAATGCCGTCAGTATCTATGCGCAGCCTTTGGAGCCCGGTGAAATGCTGGCAGACCA GTTTTTCGCCCGCAAAAAAAGCGTTGTGCTCACATCAGCGACCTTAATGGTGGAGCATTCTTTTCAATTTATGATTGAAA GGCTTGGACTTGCGGATTTTTATCCGCGCACCAAAAGCATCCCGTCTCCTTTTTCTTATGATGATCAGATGAACGTCATC ATTCCGAAAGAGATGAAATCCGTTAAATATGACGGAGAGCGGGAAGTCATTGAGCATATTGCCAAGTATGCAGAAATCAT GTCAAAGGGAAAACAGCCGAAGATCCTTGTCCTGTTTACGTCTCATGATATGCTGAAAAAAGTGTATCAGGAACTGAAAC TCAGTATGGAGATATCAGGCATTCAGCTTCTCGCCCAAGGTATTTCGGGCGGGAGTCCCGGTAAATTAATGAAAACCTTT AAAACGGCAAGCCGGGCGATTTTGCTTGGGACGAATCATTTCTGGGAAGGCGTTGATTTTCCGGGGGATGAATTGTCAAC CGTCATGATCGCAAGACTTCCTTTCAGGGCGCCTGACAATCCGCTTCATGCCGCAAAATGCGAATTTGCCAAGAAGCAGG GGAAAAATCCGTTTCAGACGATTTCCCTGCCTGAGGCTGTGTTAACGTTAAGACAGGGGATCGGGCGCCTGCTCCGTACG GCGGGAGACAAGGGAACAATCGTTCTTTTAGATCAGCGTGTAAAGACGGCGGGATACGGACGGCTGTTTCTTGAAGCGCT CCCGACTTCATCCCTTTTGGAGCTGACGGATGCCGAACTCGGGGCTTATGTCAGCCAAACGGAATAA
Upstream 100 bases:
>100_bases TTTCTTTTAAGATTTAGGGGCAAAAGCTGTTTTTCCGCTCCATTTCTCAACAAAACGTGTTACACTTTTCTCGTATGCAA GAATTGAGGTGTCCATTTTA
Downstream 100 bases:
>100_bases AAGCCGCATAAACGCGGCTTTCGTGGTGTGGGATGAGGAATTGTTTTTATAGTAAAAGCGGGTTCATGCCGCCTTGTGAT TTTATTATGCCGCGGGCGCA
Product: bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 928; Mature: 928
Protein sequence:
>928_residues MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNQAIPPFIEQLTGISSGMVENELPFEAVAEEIF HLLDGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVLDTVELSRIVFPGFEGYKLGELCAELNIVHDRPHRADSDAEVTG LVFLDILHKLKHLPLPTLKQLRRLSQHFISDLTLLLDSFIHESRPAEEKSCIPYASFSIKEPDHIPVSRPVNAAIDLEKW NEEKEQILSGIIPRYEKRKGQLSMMDEVLGAFRNREHALIEAAPGIGKTIGYLVPAVLFAKAEQTPVIISTYSTLLQQQI MSKDLPLLERMFPWPVKAAILKGKSHYLCLPKFEHILHEEDDNYDAVLTKAQLLVWLTETETGDAAELNLPSGGRLLWER MAYDENSFFKKGKDSAAGFYERAKEKAQAADLIITNHALLFSDQSSETKKLPASGTIIIDEAHHFERAASEHLGKRASYI GLHTKLSRIGTLKEHGLLKRMRKLFYTYELPAESFFDADEWMKHIQSESDAFFSSVHSFVKRRKPKDDLNRLVYSLNHKS QDKGFHMITDGAERLCAMLDQLLDMFSVQEKLLHQKLDQMKSGAAFLAAEYVKCIRGLKEYRDTFSRLLFENDEKEAVWV EIDAKGAKNAVSIYAQPLEPGEMLADQFFARKKSVVLTSATLMVEHSFQFMIERLGLADFYPRTKSIPSPFSYDDQMNVI IPKEMKSVKYDGEREVIEHIAKYAEIMSKGKQPKILVLFTSHDMLKKVYQELKLSMEISGIQLLAQGISGGSPGKLMKTF KTASRAILLGTNHFWEGVDFPGDELSTVMIARLPFRAPDNPLHAAKCEFAKKQGKNPFQTISLPEAVLTLRQGIGRLLRT AGDKGTIVLLDQRVKTAGYGRLFLEALPTSSLLELTDAELGAYVSQTE
Sequences:
>Translated_928_residues MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNQAIPPFIEQLTGISSGMVENELPFEAVAEEIF HLLDGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVLDTVELSRIVFPGFEGYKLGELCAELNIVHDRPHRADSDAEVTG LVFLDILHKLKHLPLPTLKQLRRLSQHFISDLTLLLDSFIHESRPAEEKSCIPYASFSIKEPDHIPVSRPVNAAIDLEKW NEEKEQILSGIIPRYEKRKGQLSMMDEVLGAFRNREHALIEAAPGIGKTIGYLVPAVLFAKAEQTPVIISTYSTLLQQQI MSKDLPLLERMFPWPVKAAILKGKSHYLCLPKFEHILHEEDDNYDAVLTKAQLLVWLTETETGDAAELNLPSGGRLLWER MAYDENSFFKKGKDSAAGFYERAKEKAQAADLIITNHALLFSDQSSETKKLPASGTIIIDEAHHFERAASEHLGKRASYI GLHTKLSRIGTLKEHGLLKRMRKLFYTYELPAESFFDADEWMKHIQSESDAFFSSVHSFVKRRKPKDDLNRLVYSLNHKS QDKGFHMITDGAERLCAMLDQLLDMFSVQEKLLHQKLDQMKSGAAFLAAEYVKCIRGLKEYRDTFSRLLFENDEKEAVWV EIDAKGAKNAVSIYAQPLEPGEMLADQFFARKKSVVLTSATLMVEHSFQFMIERLGLADFYPRTKSIPSPFSYDDQMNVI IPKEMKSVKYDGEREVIEHIAKYAEIMSKGKQPKILVLFTSHDMLKKVYQELKLSMEISGIQLLAQGISGGSPGKLMKTF KTASRAILLGTNHFWEGVDFPGDELSTVMIARLPFRAPDNPLHAAKCEFAKKQGKNPFQTISLPEAVLTLRQGIGRLLRT AGDKGTIVLLDQRVKTAGYGRLFLEALPTSSLLELTDAELGAYVSQTE >Mature_928_residues MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNQAIPPFIEQLTGISSGMVENELPFEAVAEEIF HLLDGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVLDTVELSRIVFPGFEGYKLGELCAELNIVHDRPHRADSDAEVTG LVFLDILHKLKHLPLPTLKQLRRLSQHFISDLTLLLDSFIHESRPAEEKSCIPYASFSIKEPDHIPVSRPVNAAIDLEKW NEEKEQILSGIIPRYEKRKGQLSMMDEVLGAFRNREHALIEAAPGIGKTIGYLVPAVLFAKAEQTPVIISTYSTLLQQQI MSKDLPLLERMFPWPVKAAILKGKSHYLCLPKFEHILHEEDDNYDAVLTKAQLLVWLTETETGDAAELNLPSGGRLLWER MAYDENSFFKKGKDSAAGFYERAKEKAQAADLIITNHALLFSDQSSETKKLPASGTIIIDEAHHFERAASEHLGKRASYI GLHTKLSRIGTLKEHGLLKRMRKLFYTYELPAESFFDADEWMKHIQSESDAFFSSVHSFVKRRKPKDDLNRLVYSLNHKS QDKGFHMITDGAERLCAMLDQLLDMFSVQEKLLHQKLDQMKSGAAFLAAEYVKCIRGLKEYRDTFSRLLFENDEKEAVWV EIDAKGAKNAVSIYAQPLEPGEMLADQFFARKKSVVLTSATLMVEHSFQFMIERLGLADFYPRTKSIPSPFSYDDQMNVI IPKEMKSVKYDGEREVIEHIAKYAEIMSKGKQPKILVLFTSHDMLKKVYQELKLSMEISGIQLLAQGISGGSPGKLMKTF KTASRAILLGTNHFWEGVDFPGDELSTVMIARLPFRAPDNPLHAAKCEFAKKQGKNPFQTISLPEAVLTLRQGIGRLLRT AGDKGTIVLLDQRVKTAGYGRLFLEALPTSSLLELTDAELGAYVSQTE
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=667, Percent_Identity=28.0359820089955, Blast_Score=235, Evalue=1e-62, Organism=Escherichia coli, GI1787018, Length=719, Percent_Identity=25.8692628650904, Blast_Score=170, Evalue=3e-43, Organism=Escherichia coli, GI1786409, Length=171, Percent_Identity=32.7485380116959, Blast_Score=81, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 104720; Mature: 104720
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNQAIPPFIEQLTG CCCCEEEEEEEEECCCCCCCCCHHHEEEEHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHC ISSGMVENELPFEAVAEEIFHLLDGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVLDTV CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECEEHHHHHHHHHHHCCCCCCCCCHHHHH ELSRIVFPGFEGYKLGELCAELNIVHDRPHRADSDAEVTGLVFLDILHKLKHLPLPTLKQ HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH LRRLSQHFISDLTLLLDSFIHESRPAEEKSCIPYASFSIKEPDHIPVSRPVNAAIDLEKW HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHH NEEKEQILSGIIPRYEKRKGQLSMMDEVLGAFRNREHALIEAAPGIGKTIGYLVPAVLFA CHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH KAEQTPVIISTYSTLLQQQIMSKDLPLLERMFPWPVKAAILKGKSHYLCLPKFEHILHEE CCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCCEEECHHHHHHHCCC DDNYDAVLTKAQLLVWLTETETGDAAELNLPSGGRLLWERMAYDENSFFKKGKDSAAGFY CCCHHHHHHEEEEEEEEEECCCCCCEEEECCCCCHHHHHHHHCCCCHHHHCCCCHHHHHH ERAKEKAQAADLIITNHALLFSDQSSETKKLPASGTIIIDEAHHFERAASEHLGKRASYI HHHHHHHHHHCEEEECCEEEEECCCCHHCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHH GLHTKLSRIGTLKEHGLLKRMRKLFYTYELPAESFFDADEWMKHIQSESDAFFSSVHSFV HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHCCHHHHHHHHHCCHHHHHHHHHHHH KRRKPKDDLNRLVYSLNHKSQDKGFHMITDGAERLCAMLDQLLDMFSVQEKLLHQKLDQM HCCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSGAAFLAAEYVKCIRGLKEYRDTFSRLLFENDEKEAVWVEIDAKGAKNAVSIYAQPLEP HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCH GEMLADQFFARKKSVVLTSATLMVEHSFQFMIERLGLADFYPRTKSIPSPFSYDDQMNVI HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCEEE IPKEMKSVKYDGEREVIEHIAKYAEIMSKGKQPKILVLFTSHDMLKKVYQELKLSMEISG ECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH IQLLAQGISGGSPGKLMKTFKTASRAILLGTNHFWEGVDFPGDELSTVMIARLPFRAPDN HHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCC PLHAAKCEFAKKQGKNPFQTISLPEAVLTLRQGIGRLLRTAGDKGTIVLLDQRVKTAGYG CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH RLFLEALPTSSLLELTDAELGAYVSQTE HHHHHHCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNQAIPPFIEQLTG CCCCEEEEEEEEECCCCCCCCCHHHEEEEHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHC ISSGMVENELPFEAVAEEIFHLLDGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVLDTV CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECEEHHHHHHHHHHHCCCCCCCCCHHHHH ELSRIVFPGFEGYKLGELCAELNIVHDRPHRADSDAEVTGLVFLDILHKLKHLPLPTLKQ HHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH LRRLSQHFISDLTLLLDSFIHESRPAEEKSCIPYASFSIKEPDHIPVSRPVNAAIDLEKW HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHH NEEKEQILSGIIPRYEKRKGQLSMMDEVLGAFRNREHALIEAAPGIGKTIGYLVPAVLFA CHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH KAEQTPVIISTYSTLLQQQIMSKDLPLLERMFPWPVKAAILKGKSHYLCLPKFEHILHEE CCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCCEEECHHHHHHHCCC DDNYDAVLTKAQLLVWLTETETGDAAELNLPSGGRLLWERMAYDENSFFKKGKDSAAGFY CCCHHHHHHEEEEEEEEEECCCCCCEEEECCCCCHHHHHHHHCCCCHHHHCCCCHHHHHH ERAKEKAQAADLIITNHALLFSDQSSETKKLPASGTIIIDEAHHFERAASEHLGKRASYI HHHHHHHHHHCEEEECCEEEEECCCCHHCCCCCCCEEEEECCHHHHHHHHHHHCCHHHHH GLHTKLSRIGTLKEHGLLKRMRKLFYTYELPAESFFDADEWMKHIQSESDAFFSSVHSFV HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHCCHHHHHHHHHCCHHHHHHHHHHHH KRRKPKDDLNRLVYSLNHKSQDKGFHMITDGAERLCAMLDQLLDMFSVQEKLLHQKLDQM HCCCCHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSGAAFLAAEYVKCIRGLKEYRDTFSRLLFENDEKEAVWVEIDAKGAKNAVSIYAQPLEP HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCH GEMLADQFFARKKSVVLTSATLMVEHSFQFMIERLGLADFYPRTKSIPSPFSYDDQMNVI HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCEEE IPKEMKSVKYDGEREVIEHIAKYAEIMSKGKQPKILVLFTSHDMLKKVYQELKLSMEISG ECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH IQLLAQGISGGSPGKLMKTFKTASRAILLGTNHFWEGVDFPGDELSTVMIARLPFRAPDN HHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCC PLHAAKCEFAKKQGKNPFQTISLPEAVLTLRQGIGRLLRTAGDKGTIVLLDQRVKTAGYG CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH RLFLEALPTSSLLELTDAELGAYVSQTE HHHHHHCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]