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The map label for this gene is dnaD [H]

Identifier: 154686482

GI number: 154686482

Start: 2150790

End: 2151488

Strand: Reverse

Name: dnaD [H]

Synonym: RBAM_020500

Alternate gene names: 154686482

Gene position: 2151488-2150790 (Counterclockwise)

Preceding gene: 154686483

Following gene: 154686481

Centisome position: 54.9

GC content: 42.06

Gene sequence:

>699_bases
ATGAAAAAACAGCAATTTATAGATATGCAGGAACTCGGCATTTCAAGCATTCCAAACCTGCTGCTGACACATTACCGGCA
GCTTGGGCTGAATGAAACCGAATTGATCCTGCTTTTGAAGATTAAAATGCATTTGGAAAAGGGCTCTTATTTTCCGACGC
CGTTTGAACTTCAGTCAGGCATGTCCATCTCTGCTGAAGAATGTACAAGCTGCCTGAGAATGTTTATTCAAAAAGGTTTT
CTGTTTATTGAAGAATGTGAAGACCATAACGGCATAAAGTTTGAAAAATATTCTCTGCAGCCGTTATGGGCGAAGCTGTA
TGATTACATGCAGCATTCACAAAACGAAACGCAGGAAAGAACGTCAGAAAGAGAACAAAAAAGCCTGTATACCATCTTTG
AAGAAGAGTTCGGAAGACCGCTGTCGCCGCTTGAATGCGAGACGCTGGCCATATGGCAGGACCAGGATCAGCATGATGCG
ATTCTGATTAAACACGCCTTAAAAGAAGCCGTTTTATCGGGAAAACTCAGTTTTCGCTATATTGACCGGATTTTATTTGA
ATGGAAAAAGAACGGCTTCAAAACGGTTGAACAGGCGAAGGCGCACAGCCAAAAATTCCGGCGTGTTCAAACAAAACAAA
ATGATCCGCAAAAAGAGTATACGAGGCAGGTGCCTTTTTACAATTGGCTGGAACAATAA

Upstream 100 bases:

>100_bases
CCGTAATAGTTTTAAAAAACGAAGTCTCCTGCAAGGGAGACTTTTTCTAAGTAAAGGGGAAAGCTCCCGGAGATAACCTT
TTACAGTAAGAGGTGTAAGG

Downstream 100 bases:

>100_bases
CATGAGAAGGGGAGAAACGTGTTAAATTTAAAGCAGATTGAATATTGTCTTGAAAAAATCGGCGATATGTTTCCGCACGC
AGAATGTGAACTTGTCCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKKQQFIDMQELGISSIPNLLLTHYRQLGLNETELILLLKIKMHLEKGSYFPTPFELQSGMSISAEECTSCLRMFIQKGF
LFIEECEDHNGIKFEKYSLQPLWAKLYDYMQHSQNETQERTSEREQKSLYTIFEEEFGRPLSPLECETLAIWQDQDQHDA
ILIKHALKEAVLSGKLSFRYIDRILFEWKKNGFKTVEQAKAHSQKFRRVQTKQNDPQKEYTRQVPFYNWLEQ

Sequences:

>Translated_232_residues
MKKQQFIDMQELGISSIPNLLLTHYRQLGLNETELILLLKIKMHLEKGSYFPTPFELQSGMSISAEECTSCLRMFIQKGF
LFIEECEDHNGIKFEKYSLQPLWAKLYDYMQHSQNETQERTSEREQKSLYTIFEEEFGRPLSPLECETLAIWQDQDQHDA
ILIKHALKEAVLSGKLSFRYIDRILFEWKKNGFKTVEQAKAHSQKFRRVQTKQNDPQKEYTRQVPFYNWLEQ
>Mature_232_residues
MKKQQFIDMQELGISSIPNLLLTHYRQLGLNETELILLLKIKMHLEKGSYFPTPFELQSGMSISAEECTSCLRMFIQKGF
LFIEECEDHNGIKFEKYSLQPLWAKLYDYMQHSQNETQERTSEREQKSLYTIFEEEFGRPLSPLECETLAIWQDQDQHDA
ILIKHALKEAVLSGKLSFRYIDRILFEWKKNGFKTVEQAKAHSQKFRRVQTKQNDPQKEYTRQVPFYNWLEQ

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27642; Mature: 27642

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQQFIDMQELGISSIPNLLLTHYRQLGLNETELILLLKIKMHLEKGSYFPTPFELQSG
CCCHHHCCHHHCCHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHCCCCCCCCHHHHCC
MSISAEECTSCLRMFIQKGFLFIEECEDHNGIKFEKYSLQPLWAKLYDYMQHSQNETQER
CCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHH
TSEREQKSLYTIFEEEFGRPLSPLECETLAIWQDQDQHDAILIKHALKEAVLSGKLSFRY
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHH
IDRILFEWKKNGFKTVEQAKAHSQKFRRVQTKQNDPQKEYTRQVPFYNWLEQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MKKQQFIDMQELGISSIPNLLLTHYRQLGLNETELILLLKIKMHLEKGSYFPTPFELQSG
CCCHHHCCHHHCCHHHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHCCCCCCCCHHHHCC
MSISAEECTSCLRMFIQKGFLFIEECEDHNGIKFEKYSLQPLWAKLYDYMQHSQNETQER
CCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHH
TSEREQKSLYTIFEEEFGRPLSPLECETLAIWQDQDQHDAILIKHALKEAVLSGKLSFRY
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHH
IDRILFEWKKNGFKTVEQAKAHSQKFRRVQTKQNDPQKEYTRQVPFYNWLEQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]