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The map label for this gene is yodR [H]

Identifier: 154686387

GI number: 154686387

Start: 2068711

End: 2069406

Strand: Reverse

Name: yodR [H]

Synonym: RBAM_019550

Alternate gene names: 154686387

Gene position: 2069406-2068711 (Counterclockwise)

Preceding gene: 154686388

Following gene: 154686386

Centisome position: 52.81

GC content: 52.3

Gene sequence:

>696_bases
ATGGGCTTGGGAATAGCGGAAAGAGAGAGTATCGCGAGGCGGGCCGCCAGTGAAGTTACCTCAGGTATGATTGTCAACCT
GGGGATCGGCATTCCTTCTTTAGTGCCGAACTTTCTGCCTGCCGGCATGGAGGTCATGCTGCAGGCGGAAAACGGCGTCC
TCGGGATCGGCGGCAGTCCGGAGCGCGGAGAGGAGGATGAGCTTTTATGCAATGCGGCCGGGTTTCCTGTCAGTACAGTT
AAGGGTGCTTCCTATTTTGATTCAGCTCTGTCTTTTGCCATGATCAGAAAAGGGCTGATAGATATTACCATTTTAGGCGC
GCTCCAAGTCAGCAGGACAGGTGATCTCGCCAATTGGCTCGTGCCGGGAAAAAAAGTGCCCGGAATGGGCGGGGCGATGG
AGCTTGCCCAAGGCGCGAAAAAAGTAGTTGTCGTCATGAGCCACACCGATCAGAAAGGCCGGCCGAAGCTGGTCGAAAGC
TGTTCATTGCCGCTTACAGCAGCGGGCTGTGCAGATCTCATCATTACAGAGAAAGCCGTCATCAGCATAGATGATGGGGC
TTTTGTTCTTGAGGAACTGCTGAATGGCACGACCATAGACGATGTCATTCAAACAACGGATGCCGAAATCAGATTGGGAG
AATGTTTTCTTAAAAGGGGGTCTGTCCATGGATCAATTAGAAGAGAAAGTCACTGA

Upstream 100 bases:

>100_bases
CAGCAGAGATTGTGCCTGCCGGCGAACTTGACAGCGAGCATATTGTAACGCCGGGCGTTTTCGTGGAGGGTGTCGTGCAA
AGTGAAGGAGTGAAGTGGAG

Downstream 100 bases:

>100_bases
GTGGGCGGAAGAAAACACAGCAAAAGCGGTAAGCTTGCTGAAACGGCTGATCGGGGAAAAAAGCACGTTCGGCCATGAAT
TTAACGCACAGGCAGTCGTT

Product: YodR

Products: Acetate; Butanoyl-CoA [C]

Alternate protein names: Probable CoA-transferase subunit beta [H]

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MGLGIAERESIARRAASEVTSGMIVNLGIGIPSLVPNFLPAGMEVMLQAENGVLGIGGSPERGEEDELLCNAAGFPVSTV
KGASYFDSALSFAMIRKGLIDITILGALQVSRTGDLANWLVPGKKVPGMGGAMELAQGAKKVVVVMSHTDQKGRPKLVES
CSLPLTAAGCADLIITEKAVISIDDGAFVLEELLNGTTIDDVIQTTDAEIRLGECFLKRGSVHGSIRRESH

Sequences:

>Translated_231_residues
MGLGIAERESIARRAASEVTSGMIVNLGIGIPSLVPNFLPAGMEVMLQAENGVLGIGGSPERGEEDELLCNAAGFPVSTV
KGASYFDSALSFAMIRKGLIDITILGALQVSRTGDLANWLVPGKKVPGMGGAMELAQGAKKVVVVMSHTDQKGRPKLVES
CSLPLTAAGCADLIITEKAVISIDDGAFVLEELLNGTTIDDVIQTTDAEIRLGECFLKRGSVHGSIRRESH
>Mature_230_residues
GLGIAERESIARRAASEVTSGMIVNLGIGIPSLVPNFLPAGMEVMLQAENGVLGIGGSPERGEEDELLCNAAGFPVSTVK
GASYFDSALSFAMIRKGLIDITILGALQVSRTGDLANWLVPGKKVPGMGGAMELAQGAKKVVVVMSHTDQKGRPKLVESC
SLPLTAAGCADLIITEKAVISIDDGAFVLEELLNGTTIDDVIQTTDAEIRLGECFLKRGSVHGSIRRESH

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=201, Percent_Identity=52.7363184079602, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI11545841, Length=201, Percent_Identity=50.2487562189055, Blast_Score=191, Evalue=3e-49,
Organism=Escherichia coli, GI1788552, Length=205, Percent_Identity=45.8536585365854, Blast_Score=186, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17531517, Length=210, Percent_Identity=50.9523809523809, Blast_Score=201, Evalue=2e-52,
Organism=Drosophila melanogaster, GI21358325, Length=217, Percent_Identity=52.073732718894, Blast_Score=217, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24655794, Length=217, Percent_Identity=52.073732718894, Blast_Score=217, Evalue=4e-57,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: 2.8.3.8 [C]

Molecular weight: Translated: 24174; Mature: 24043

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLGIAERESIARRAASEVTSGMIVNLGIGIPSLVPNFLPAGMEVMLQAENGVLGIGGSP
CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCEEEEEEECCCEEECCCCC
ERGEEDELLCNAAGFPVSTVKGASYFDSALSFAMIRKGLIDITILGALQVSRTGDLANWL
CCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHC
VPGKKVPGMGGAMELAQGAKKVVVVMSHTDQKGRPKLVESCSLPLTAAGCADLIITEKAV
CCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCCCEECCCHHHHEEECCEE
ISIDDGAFVLEELLNGTTIDDVIQTTDAEIRLGECFLKRGSVHGSIRRESH
EEECCCHHHHHHHHCCCCHHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GLGIAERESIARRAASEVTSGMIVNLGIGIPSLVPNFLPAGMEVMLQAENGVLGIGGSP
CCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCEEEEEEECCCEEECCCCC
ERGEEDELLCNAAGFPVSTVKGASYFDSALSFAMIRKGLIDITILGALQVSRTGDLANWL
CCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHC
VPGKKVPGMGGAMELAQGAKKVVVVMSHTDQKGRPKLVESCSLPLTAAGCADLIITEKAV
CCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCCCEECCCHHHHEEECCEE
ISIDDGAFVLEELLNGTTIDDVIQTTDAEIRLGECFLKRGSVHGSIRRESH
EEECCCHHHHHHHHCCCCHHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acetyl-CoA; Butyrate [C]

Specific reaction: Acetyl-CoA + Butyrate (n-C4:0) --> Acetate + Butanoyl-CoA [C]

General reaction: Coenzyme A transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]