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The map label for this gene is yodD [H]

Identifier: 154686364

GI number: 154686364

Start: 2049567

End: 2050172

Strand: Reverse

Name: yodD [H]

Synonym: RBAM_019320

Alternate gene names: 154686364

Gene position: 2050172-2049567 (Counterclockwise)

Preceding gene: 154686365

Following gene: 154686362

Centisome position: 52.32

GC content: 47.36

Gene sequence:

>606_bases
ATGATGAAACATGTGTTTGAACAGGGAACGTCAGAAAATGTTCTGCTGCTTTTGCACGGAACGGGAGGAAATGAACATGA
TCTTCTGTCGCTCGGACGTTTTATCGATCCGAACGCAAGTCTGCTCGGGGTCAGAGGATCAGTGTCGGAAAACGGCATGC
CCCGTTTTTTTAAGCGGCTGAAAGAAGGCGTATTTGACGAGAAAGATTTAATTGAACGGACGGAAGAATTAAAGAATTTT
ATTGATGAAGCGGCGCAAATGTACGGATTCAGCAGAGAAAACGTGATTGCTGCCGGCTATTCAAACGGCGCCAATATTGC
AGCAAGTCTTTTGTTTCATTATAAAGATGTACTGAAAGGAGCGGTTCTGCATCATCCGATGGTGCCGATACGCGGAGTGA
AGCTGCCTGATATGGAAGGGATGCCTGTGTTTATCGGTGCGGGAAAACGCGATCCTCTATGTACAAAAGAAGAATCGGAG
GAGCTTTATCAGTATCTGACAGATGCCCATGCATCCGTTTCGCTTGTTTGGCAGGAGGGCGGTCATCAGCTCACACAGCA
GGAAGCAGAGCAGGCACGAACCTGGTACAGTGAGCGATTCCTATAA

Upstream 100 bases:

>100_bases
CCTTTGAAAATCTCGGAACAGAGCTGAAGCTTCCGGAATGGCTGGAAGAGCATCGCAGCCAGATTACAGCTGTTCTGCCC
AAAATGGAGAAAGGAGAATG

Downstream 100 bases:

>100_bases
AAAACCCTTAGTCTGCTTAAGCGGACTAAGGGTTTCTTTCATCTTACAGCCAAGTTGACACTTTAGATACAGGCAGCCGG
TTGCTTTTATGCGCCGGCTT

Product: YodD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MMKHVFEQGTSENVLLLLHGTGGNEHDLLSLGRFIDPNASLLGVRGSVSENGMPRFFKRLKEGVFDEKDLIERTEELKNF
IDEAAQMYGFSRENVIAAGYSNGANIAASLLFHYKDVLKGAVLHHPMVPIRGVKLPDMEGMPVFIGAGKRDPLCTKEESE
ELYQYLTDAHASVSLVWQEGGHQLTQQEAEQARTWYSERFL

Sequences:

>Translated_201_residues
MMKHVFEQGTSENVLLLLHGTGGNEHDLLSLGRFIDPNASLLGVRGSVSENGMPRFFKRLKEGVFDEKDLIERTEELKNF
IDEAAQMYGFSRENVIAAGYSNGANIAASLLFHYKDVLKGAVLHHPMVPIRGVKLPDMEGMPVFIGAGKRDPLCTKEESE
ELYQYLTDAHASVSLVWQEGGHQLTQQEAEQARTWYSERFL
>Mature_201_residues
MMKHVFEQGTSENVLLLLHGTGGNEHDLLSLGRFIDPNASLLGVRGSVSENGMPRFFKRLKEGVFDEKDLIERTEELKNF
IDEAAQMYGFSRENVIAAGYSNGANIAASLLFHYKDVLKGAVLHHPMVPIRGVKLPDMEGMPVFIGAGKRDPLCTKEESE
ELYQYLTDAHASVSLVWQEGGHQLTQQEAEQARTWYSERFL

Specific function: Putative hydrolase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0400

COG function: function code R; Predicted esterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003140 [H]

Pfam domain/function: PF02230 Abhydrolase_2 [H]

EC number: NA

Molecular weight: Translated: 22555; Mature: 22555

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKHVFEQGTSENVLLLLHGTGGNEHDLLSLGRFIDPNASLLGVRGSVSENGMPRFFKRL
CCCCHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
KEGVFDEKDLIERTEELKNFIDEAAQMYGFSRENVIAAGYSNGANIAASLLFHYKDVLKG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
AVLHHPMVPIRGVKLPDMEGMPVFIGAGKRDPLCTKEESEELYQYLTDAHASVSLVWQEG
HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
GHQLTQQEAEQARTWYSERFL
CCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMKHVFEQGTSENVLLLLHGTGGNEHDLLSLGRFIDPNASLLGVRGSVSENGMPRFFKRL
CCCCHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
KEGVFDEKDLIERTEELKNFIDEAAQMYGFSRENVIAAGYSNGANIAASLLFHYKDVLKG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
AVLHHPMVPIRGVKLPDMEGMPVFIGAGKRDPLCTKEESEELYQYLTDAHASVSLVWQEG
HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
GHQLTQQEAEQARTWYSERFL
CCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]