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The map label for this gene is yodE [H]

Identifier: 154686365

GI number: 154686365

Start: 2050172

End: 2051095

Strand: Reverse

Name: yodE [H]

Synonym: RBAM_019330

Alternate gene names: 154686365

Gene position: 2051095-2050172 (Counterclockwise)

Preceding gene: 154686367

Following gene: 154686364

Centisome position: 52.34

GC content: 46.65

Gene sequence:

>924_bases
TTGAATACGCAAGGATTGCACCATGTTACCGCATTTGCAAAAGATCCTGCTGAAAATCTTCGGTTTTATACTGAAGTGCT
GGGTTTGCGGCTCGTTAAAAAAACCGTTAATTTTGACGACCCGGCCACTTATCACTTTTATTTCGGCAACCAAAACGGAG
AGCCGGGCACGATCATTACATTTTTTCCTTTTCAGGGAAGCCGCCCGGGAACCGTGGGAAAAGGGCAGGCCGGAAGAATT
TATTTCTCCGTGCCGAAAGGAGCACTCGCGTTTTGGAAGCGCCGGCTTGAAGAAAACGGCTTGTCTGTAAAAGAACAGAT
CATGCTGTCTGAACAAGTGCTTCTCTTTAATGATACAGAAGACCTGCCGCTTGCCATAATGGAAGATGAAAGAAGCGGAC
AGAGTGAATGGACGCCTGCGGGCATTACTGAAAAAGATGCGATCACAGGCATGAGAGGTGTTCTTCTGTACTCGTACCGT
CCTGAAGCAACCATTAAATTTCTCATAGAACGCTTCGGTTATTCAAAGACAGGAGAAGAACATCAGATTGTCAGGCTGCA
ATCGGAGGCGCGGATCGGACATATTATAGATGTTGATCTCGCGCCGAAAGAAGCAGGTATCGGCGGTTACGGGACGGTTC
ATCATGTCGCTTTCCGCACTAGCGAAAAAGAGCAGGCGGAATGGAAGGATATTCTTGCTGATTCTCATCTTGCTTCATCT
GATATTCTTGACAGGTCTTACTTTACATCAATCTATTTCAGGGAAAGCGGCGGCATTTTATTTGAAATGGCAACCGATGA
ACCGGGCTTTATGACGGATGAATCCTTTGAAAATCTCGGAACAGAGCTGAAGCTTCCGGAATGGCTGGAAGAGCATCGCA
GCCAGATTACAGCTGTTCTGCCCAAAATGGAGAAAGGAGAATGA

Upstream 100 bases:

>100_bases
TTCTATTACTTTTTTAACTGAAACACTTTAGTTGCATCTTCATTCATATTAAATTAAAATAGTTAATATCTCGAAATCAA
GATATTTAGGAGTGAATACA

Downstream 100 bases:

>100_bases
TGATGAAACATGTGTTTGAACAGGGAACGTCAGAAAATGTTCTGCTGCTTTTGCACGGAACGGGAGGAAATGAACATGAT
CTTCTGTCGCTCGGACGTTT

Product: YodE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNTQGLHHVTAFAKDPAENLRFYTEVLGLRLVKKTVNFDDPATYHFYFGNQNGEPGTIITFFPFQGSRPGTVGKGQAGRI
YFSVPKGALAFWKRRLEENGLSVKEQIMLSEQVLLFNDTEDLPLAIMEDERSGQSEWTPAGITEKDAITGMRGVLLYSYR
PEATIKFLIERFGYSKTGEEHQIVRLQSEARIGHIIDVDLAPKEAGIGGYGTVHHVAFRTSEKEQAEWKDILADSHLASS
DILDRSYFTSIYFRESGGILFEMATDEPGFMTDESFENLGTELKLPEWLEEHRSQITAVLPKMEKGE

Sequences:

>Translated_307_residues
MNTQGLHHVTAFAKDPAENLRFYTEVLGLRLVKKTVNFDDPATYHFYFGNQNGEPGTIITFFPFQGSRPGTVGKGQAGRI
YFSVPKGALAFWKRRLEENGLSVKEQIMLSEQVLLFNDTEDLPLAIMEDERSGQSEWTPAGITEKDAITGMRGVLLYSYR
PEATIKFLIERFGYSKTGEEHQIVRLQSEARIGHIIDVDLAPKEAGIGGYGTVHHVAFRTSEKEQAEWKDILADSHLASS
DILDRSYFTSIYFRESGGILFEMATDEPGFMTDESFENLGTELKLPEWLEEHRSQITAVLPKMEKGE
>Mature_307_residues
MNTQGLHHVTAFAKDPAENLRFYTEVLGLRLVKKTVNFDDPATYHFYFGNQNGEPGTIITFFPFQGSRPGTVGKGQAGRI
YFSVPKGALAFWKRRLEENGLSVKEQIMLSEQVLLFNDTEDLPLAIMEDERSGQSEWTPAGITEKDAITGMRGVLLYSYR
PEATIKFLIERFGYSKTGEEHQIVRLQSEARIGHIIDVDLAPKEAGIGGYGTVHHVAFRTSEKEQAEWKDILADSHLASS
DILDRSYFTSIYFRESGGILFEMATDEPGFMTDESFENLGTELKLPEWLEEHRSQITAVLPKMEKGE

Specific function: Putative ring-cleavage dioxygenase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0346

COG function: function code E; Lactoylglutathione lyase and related lyases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the extradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000595
- InterPro:   IPR004360 [H]

Pfam domain/function: PF00903 Glyoxalase [H]

EC number: NA

Molecular weight: Translated: 34639; Mature: 34639

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQGLHHVTAFAKDPAENLRFYTEVLGLRLVKKTVNFDDPATYHFYFGNQNGEPGTIIT
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEE
FFPFQGSRPGTVGKGQAGRIYFSVPKGALAFWKRRLEENGLSVKEQIMLSEQVLLFNDTE
EECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCEEEEEECCC
DLPLAIMEDERSGQSEWTPAGITEKDAITGMRGVLLYSYRPEATIKFLIERFGYSKTGEE
CCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCC
HQIVRLQSEARIGHIIDVDLAPKEAGIGGYGTVHHVAFRTSEKEQAEWKDILADSHLASS
CEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCHH
DILDRSYFTSIYFRESGGILFEMATDEPGFMTDESFENLGTELKLPEWLEEHRSQITAVL
HHHHHHHEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHC
PKMEKGE
CCCCCCC
>Mature Secondary Structure
MNTQGLHHVTAFAKDPAENLRFYTEVLGLRLVKKTVNFDDPATYHFYFGNQNGEPGTIIT
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEE
FFPFQGSRPGTVGKGQAGRIYFSVPKGALAFWKRRLEENGLSVKEQIMLSEQVLLFNDTE
EECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCEEEEEECCC
DLPLAIMEDERSGQSEWTPAGITEKDAITGMRGVLLYSYRPEATIKFLIERFGYSKTGEE
CCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCC
HQIVRLQSEARIGHIIDVDLAPKEAGIGGYGTVHHVAFRTSEKEQAEWKDILADSHLASS
CEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCHH
DILDRSYFTSIYFRESGGILFEMATDEPGFMTDESFENLGTELKLPEWLEEHRSQITAVL
HHHHHHHEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHC
PKMEKGE
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]