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The map label for this gene is yodB [H]

Identifier: 154686362

GI number: 154686362

Start: 2048444

End: 2048785

Strand: Reverse

Name: yodB [H]

Synonym: RBAM_019300

Alternate gene names: 154686362

Gene position: 2048785-2048444 (Counterclockwise)

Preceding gene: 154686364

Following gene: 154686359

Centisome position: 52.28

GC content: 46.2

Gene sequence:

>342_bases
GTGGGATATACAATGTGTCCTAAAATGGAATCCGCTTTTTCTCTTTTGGGAAAGCGCTGGAACGGCCTCATTATCCATGT
ACTGATGGACGGGCCGAAACGATTTAAAGATATGACCGAAACGATACCGACAATCAGCCAAAAAATGCTCGCGGAGCGGC
TCAAAGAGCTGGAACAAAATGAAATTGTCGAGCGTCAGGTGCTGCCTGAAACACCTGTCAAAGTCATTTATAAACTGACT
GATAAAGGCTTGGCCCTGCAAGCCGTTTTTCAGGAAATGCAAAAATGGGCAGACAGTTTTTGCGAGCCCGGGGGATCTGC
CAACGACACATGTGATGAATAA

Upstream 100 bases:

>100_bases
TCATAATAGAAAAGTTAGAAGCTTACTAAATGTAACTCGAAAACTAATTTTAATGGATCACAAAAAACTTGTCAATTCAT
AGATGAAGGGATGAACTCAC

Downstream 100 bases:

>100_bases
CAAAGGCTGCCCAAGGCAGCCTTTTCTTAATGACAATGTTTACTCGTCATAAAAACCATTAATATCAAAATTGTTCAGAT
TGAGGTTCAAGCCTTTTAAT

Product: YodB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MGYTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKDMTETIPTISQKMLAERLKELEQNEIVERQVLPETPVKVIYKLT
DKGLALQAVFQEMQKWADSFCEPGGSANDTCDE

Sequences:

>Translated_113_residues
MGYTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKDMTETIPTISQKMLAERLKELEQNEIVERQVLPETPVKVIYKLT
DKGLALQAVFQEMQKWADSFCEPGGSANDTCDE
>Mature_112_residues
GYTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKDMTETIPTISQKMLAERLKELEQNEIVERQVLPETPVKVIYKLTD
KGLALQAVFQEMQKWADSFCEPGGSANDTCDE

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12869; Mature: 12738

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKDMTETIPTISQKMLAERLKELEQN
CCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVERQVLPETPVKVIYKLTDKGLALQAVFQEMQKWADSFCEPGGSANDTCDE
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GYTMCPKMESAFSLLGKRWNGLIIHVLMDGPKRFKDMTETIPTISQKMLAERLKELEQN
CCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVERQVLPETPVKVIYKLTDKGLALQAVFQEMQKWADSFCEPGGSANDTCDE
HHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]