Click here to switch to the map view.

The map label for this gene is yhjH [H]

Identifier: 154685644

GI number: 154685644

Start: 1179334

End: 1179807

Strand: Reverse

Name: yhjH [H]

Synonym: RBAM_012110

Alternate gene names: 154685644

Gene position: 1179807-1179334 (Counterclockwise)

Preceding gene: 154685645

Following gene: 154685643

Centisome position: 30.11

GC content: 38.4

Gene sequence:

>474_bases
ATGGACAAAAAAGAACAGCTCCTCACGGATTTCAGGGACTTTTTTAACAAGATGGTGTGGCTGAATAGGCTGAAGATGGA
AGAAAGCCTTAAGGGGCATAAACCTTCTGAAGTGCATTGCATCGAATTCATCGAAAAAATTGAAGACGCCAATGTGACTA
AACTTGCGGAGTCCCTTTATATGACAAGAGGCGCCATAAGTAAATTAACGAAAAAGCTTATCAATAAAGGCCTTATCGAA
AGCTATCAGAAGCCGCTTAACAAGAAAGAAATCTATTTCAGGCTTACTGAGCAAGGAAAAGTCATTTATAAAATTCACGA
GGAATTGCATAAAGAGTTTCAAGAACGGGACAAAATCGTGTTTGAACAAGTAACTGATGAACAATTTGACACGATGCTGA
ACTTCGTGGAAACATACAGCAGGCATTTGGATTCAGAAATAAAGAAACTTGGTGCAGACTTGAAATCGGAATAA

Upstream 100 bases:

>100_bases
GCACTATCTCTCAGTTCCTAAATAATAACTTTACGATTGTTGAAAAAGAAACAAACATTTTATAATATTGTGTAAGCACC
ACCGAGCAGGAGGACGGGAC

Downstream 100 bases:

>100_bases
ATATGAATAAAACCATAGGCAGCCCTGCTCCATGAAAACGGGCTGCCTTTTTATATCCCTCTTATTGTTGACAAAGAAAC
AAAATTACTCTATTATTTTG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MDKKEQLLTDFRDFFNKMVWLNRLKMEESLKGHKPSEVHCIEFIEKIEDANVTKLAESLYMTRGAISKLTKKLINKGLIE
SYQKPLNKKEIYFRLTEQGKVIYKIHEELHKEFQERDKIVFEQVTDEQFDTMLNFVETYSRHLDSEIKKLGADLKSE

Sequences:

>Translated_157_residues
MDKKEQLLTDFRDFFNKMVWLNRLKMEESLKGHKPSEVHCIEFIEKIEDANVTKLAESLYMTRGAISKLTKKLINKGLIE
SYQKPLNKKEIYFRLTEQGKVIYKIHEELHKEFQERDKIVFEQVTDEQFDTMLNFVETYSRHLDSEIKKLGADLKSE
>Mature_157_residues
MDKKEQLLTDFRDFFNKMVWLNRLKMEESLKGHKPSEVHCIEFIEKIEDANVTKLAESLYMTRGAISKLTKKLINKGLIE
SYQKPLNKKEIYFRLTEQGKVIYKIHEELHKEFQERDKIVFEQVTDEQFDTMLNFVETYSRHLDSEIKKLGADLKSE

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18750; Mature: 18750

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKEQLLTDFRDFFNKMVWLNRLKMEESLKGHKPSEVHCIEFIEKIEDANVTKLAESLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
MTRGAISKLTKKLINKGLIESYQKPLNKKEIYFRLTEQGKVIYKIHEELHKEFQERDKIV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH
FEQVTDEQFDTMLNFVETYSRHLDSEIKKLGADLKSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDKKEQLLTDFRDFFNKMVWLNRLKMEESLKGHKPSEVHCIEFIEKIEDANVTKLAESLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
MTRGAISKLTKKLINKGLIESYQKPLNKKEIYFRLTEQGKVIYKIHEELHKEFQERDKIV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH
FEQVTDEQFDTMLNFVETYSRHLDSEIKKLGADLKSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9457850; 9384377 [H]