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The map label for this gene is ganA

Identifier: 154685645

GI number: 154685645

Start: 1180093

End: 1181205

Strand: Reverse

Name: ganA

Synonym: RBAM_012120

Alternate gene names: NA

Gene position: 1181205-1180093 (Counterclockwise)

Preceding gene: 154685646

Following gene: 154685644

Centisome position: 30.14

GC content: 47.35

Gene sequence:

>1113_bases
ATGTTCAAAAACCGATTGAAACGTGTATTTGTAAACGCAATCTGTCTTTCTCTCATTTTCACTGCTTTTACATTCTTTGA
GAAGTCTCCTAAAGCAAAAGCGGAAGCCCCGTTTGCCTATGGCGCTGATATAGGATGGCTGAAACAAATGGAGGACGAAG
GTGTGCGCTGGCTGGATGACGGCGGAAAACAGAAAGATGCCTTGCAGATTCTTAAAGATCACGGAATAAATGCCGTGAGA
CTGAGAGTGTTTGTGAATCCGCCAAGCAGCTATTATTGGCTGAAAGACGGCACAACATGGACCATGCTCGGCTATAGTGA
CAAAGCGGGCGTACTTGCGGCGGCCAAAAGGGCAAAAGCGTTAGGAATGAAGGTAATGGTTGACTTCCATTACAGTGATG
TGTTCGCTGATCCAGGCCACCAGATCAAGCCGAACCAATGGAACGGTTATTCAAACAGCCAGCTGCAGGCAGCCGTGTAT
AACCATACGTACGATGTCATGAAAGAACTTAAAAATCACGGCATCTCCCCTGATTGGGTGCAAGTAGGGAATGAAATGAA
TTCAGGAATTTTACTGCCCGACGGCAGCACGAACGATTTCAGCAAATTGACCGGCTTACTGAACAAAGGCTATGACGCCG
TGAAATCCGTCAGCCCGGCCACCAAGGTCATCAGCCATTTGGCACACGGCACGGACAACAGCCTATTCAGATGGTGGTTT
GATCAATTCTTTAAAAATGGAGGAAAAACCGACATCATCGGCGTTTCATTCTATCCCTATTGGGAAGGTAAGCCGTACTG
GGAGCTCACCGGCCATTTATCATCTAATTTGAATGACATCGCCTCACGCTACAACAAGGAAGTCATGGTGGTTGAACTGG
GCGGAGATGAAAATAATCCGAAAGATTCCTACTGGACCATAAAAGACACCATAAAACTGGTGAAAGCCGTTCCGAACGGC
AAAGGAACCGGCGTATTTTACTGGGAGCCCGAAGCTCACTCCAGCGTTCTGTCAGACGCGTACCCATTAGGCGCAACCGC
CAAAGTGTCTAAAAACGTCTTGAAATACACAACCGCAATCGACGCTTTTCATGATGCCGCAACAGGAAAATGA

Upstream 100 bases:

>100_bases
AATTCAGGCGTTTCAGCGTTTCACGACGTTATTGGAGAATGGCAGCTGAAACATTCAGAGTGAAATCAATCAACAATCTT
TTTTATCAGGAGGTATTGTG

Downstream 100 bases:

>100_bases
TTGATGCGAATCTCAAGCAGGCTCATTGCGCAGCCTGCTTTTTGATAAGGCTGTAGTGTTGGCCTGTTATGAAAAAGAGC
AAGTAACGAATACGGAAAGA

Product: GanA

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MFKNRLKRVFVNAICLSLIFTAFTFFEKSPKAKAEAPFAYGADIGWLKQMEDEGVRWLDDGGKQKDALQILKDHGINAVR
LRVFVNPPSSYYWLKDGTTWTMLGYSDKAGVLAAAKRAKALGMKVMVDFHYSDVFADPGHQIKPNQWNGYSNSQLQAAVY
NHTYDVMKELKNHGISPDWVQVGNEMNSGILLPDGSTNDFSKLTGLLNKGYDAVKSVSPATKVISHLAHGTDNSLFRWWF
DQFFKNGGKTDIIGVSFYPYWEGKPYWELTGHLSSNLNDIASRYNKEVMVVELGGDENNPKDSYWTIKDTIKLVKAVPNG
KGTGVFYWEPEAHSSVLSDAYPLGATAKVSKNVLKYTTAIDAFHDAATGK

Sequences:

>Translated_370_residues
MFKNRLKRVFVNAICLSLIFTAFTFFEKSPKAKAEAPFAYGADIGWLKQMEDEGVRWLDDGGKQKDALQILKDHGINAVR
LRVFVNPPSSYYWLKDGTTWTMLGYSDKAGVLAAAKRAKALGMKVMVDFHYSDVFADPGHQIKPNQWNGYSNSQLQAAVY
NHTYDVMKELKNHGISPDWVQVGNEMNSGILLPDGSTNDFSKLTGLLNKGYDAVKSVSPATKVISHLAHGTDNSLFRWWF
DQFFKNGGKTDIIGVSFYPYWEGKPYWELTGHLSSNLNDIASRYNKEVMVVELGGDENNPKDSYWTIKDTIKLVKAVPNG
KGTGVFYWEPEAHSSVLSDAYPLGATAKVSKNVLKYTTAIDAFHDAATGK
>Mature_370_residues
MFKNRLKRVFVNAICLSLIFTAFTFFEKSPKAKAEAPFAYGADIGWLKQMEDEGVRWLDDGGKQKDALQILKDHGINAVR
LRVFVNPPSSYYWLKDGTTWTMLGYSDKAGVLAAAKRAKALGMKVMVDFHYSDVFADPGHQIKPNQWNGYSNSQLQAAVY
NHTYDVMKELKNHGISPDWVQVGNEMNSGILLPDGSTNDFSKLTGLLNKGYDAVKSVSPATKVISHLAHGTDNSLFRWWF
DQFFKNGGKTDIIGVSFYPYWEGKPYWELTGHLSSNLNDIASRYNKEVMVVELGGDENNPKDSYWTIKDTIKLVKAVPNG
KGTGVFYWEPEAHSSVLSDAYPLGATAKVSKNVLKYTTAIDAFHDAATGK

Specific function: Unknown

COG id: COG3867

COG function: function code G; Arabinogalactan endo-1,4-beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 53 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011683
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07745 Glyco_hydro_53 [H]

EC number: NA

Molecular weight: Translated: 41324; Mature: 41324

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKNRLKRVFVNAICLSLIFTAFTFFEKSPKAKAEAPFAYGADIGWLKQMEDEGVRWLDD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHCCCEEECC
GGKQKDALQILKDHGINAVRLRVFVNPPSSYYWLKDGTTWTMLGYSDKAGVLAAAKRAKA
CCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHH
LGMKVMVDFHYSDVFADPGHQIKPNQWNGYSNSQLQAAVYNHTYDVMKELKNHGISPDWV
CCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHH
QVGNEMNSGILLPDGSTNDFSKLTGLLNKGYDAVKSVSPATKVISHLAHGTDNSLFRWWF
HHCCCCCCCEEECCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH
DQFFKNGGKTDIIGVSFYPYWEGKPYWELTGHLSSNLNDIASRYNKEVMVVELGGDENNP
HHHHHCCCCEEEEEEEEEECCCCCEEEEEECCHHCCHHHHHHHHCCEEEEEEECCCCCCC
KDSYWTIKDTIKLVKAVPNGKGTGVFYWEPEAHSSVLSDAYPLGATAKVSKNVLKYTTAI
CCCEEEHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
DAFHDAATGK
HHHHHHCCCC
>Mature Secondary Structure
MFKNRLKRVFVNAICLSLIFTAFTFFEKSPKAKAEAPFAYGADIGWLKQMEDEGVRWLDD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHCCCEEECC
GGKQKDALQILKDHGINAVRLRVFVNPPSSYYWLKDGTTWTMLGYSDKAGVLAAAKRAKA
CCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHH
LGMKVMVDFHYSDVFADPGHQIKPNQWNGYSNSQLQAAVYNHTYDVMKELKNHGISPDWV
CCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCHHH
QVGNEMNSGILLPDGSTNDFSKLTGLLNKGYDAVKSVSPATKVISHLAHGTDNSLFRWWF
HHCCCCCCCEEECCCCCCHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH
DQFFKNGGKTDIIGVSFYPYWEGKPYWELTGHLSSNLNDIASRYNKEVMVVELGGDENNP
HHHHHCCCCEEEEEEEEEECCCCCEEEEEECCHHCCHHHHHHHHCCEEEEEEECCCCCCC
KDSYWTIKDTIKLVKAVPNGKGTGVFYWEPEAHSSVLSDAYPLGATAKVSKNVLKYTTAI
CCCEEEHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
DAFHDAATGK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA