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The map label for this gene is ycnD [H]

Identifier: 154684880

GI number: 154684880

Start: 409718

End: 410464

Strand: Reverse

Name: ycnD [H]

Synonym: RBAM_004110

Alternate gene names: 154684880

Gene position: 410464-409718 (Counterclockwise)

Preceding gene: 154684881

Following gene: 154684879

Centisome position: 10.47

GC content: 49.4

Gene sequence:

>747_bases
ATGAACGAAGTCCTTCAATTATTAACAGACCACCGTTCCATCCGCAGCTACACAGATGAACCTGTATCGGATGAACAGCT
GGATCTTATCATCCAAGCCGCTCAGGCAGCGCCGACTTCCATTAACGGCCAGCAATTTACCGTTATTGCGGTGAAAGATA
AGGAGCGGAAGAAAAAAATATCCGAATTGGCTGGCGGCCAGCCGTGGATTGACCAAGCGCCGGTTTTCCTTTTATTCTGC
GCTGATTTTAACCGCGCCAAAATTGCGCTTGAAGAGTATAATGATACACCGCTTGAGATCACGAACGGTTTAGAGTCCGT
CTTAGTCGGAGCCGTAGATGTCGGGATTGCGCTGGGTACGGCAACGGCTGCGGCTGAATCAATGGGACTCGGCACTGTGC
CGATCGGCGCCGTGCGCGGCAAGCCGGACGAACTCATTGAATTGCTGAAACTTCCGAAATACGTTTTCCCGGTTTCCGGT
CTCGTCATCGGCCATCCGGCAGACCGCTCCGCGAAAAAACCGCGTCTGCCGCAAGCAGCCGTTCTGCATCATGAAACGTA
TCAAGAAGAAGATTTAAGAACACATATCGAGGCCTATGACAAGCAGATGTCCGAATACATGAAAAAACGCACCGACGGAC
AGGAAACGAGAAACTGGTCACAAGGCATCACCTCCTACTATAAGCAGATTTATTATCCTCACATTCGTGAAATGCTTGAA
AAACAAGGGTTTAAGACGGATAAATAA

Upstream 100 bases:

>100_bases
GACCATTTCCAAGGATTCGTGGCAAAAGCAAAAGAAGTGCTGAGTGCGCCGCTTGACGTCGTCCGCACAGAACTGTCAGA
GTAACGAAAGGATGAATGAC

Downstream 100 bases:

>100_bases
GCGGATCAGCCTGCCGGAACACTCCGGCAGGTTTTTTCTGTTCCTCAAACAAAAGCGTTGACACTATGTAAAAATTTTTG
TTAATATTTTCATCATATAC

Product: YcnD

Products: NA

Alternate protein names: NAD(P)H-dependent FMN reductase; NAD(P)H-dependent nitroreductase; NAD(P)H-dependent oxidoreductase [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNEVLQLLTDHRSIRSYTDEPVSDEQLDLIIQAAQAAPTSINGQQFTVIAVKDKERKKKISELAGGQPWIDQAPVFLLFC
ADFNRAKIALEEYNDTPLEITNGLESVLVGAVDVGIALGTATAAAESMGLGTVPIGAVRGKPDELIELLKLPKYVFPVSG
LVIGHPADRSAKKPRLPQAAVLHHETYQEEDLRTHIEAYDKQMSEYMKKRTDGQETRNWSQGITSYYKQIYYPHIREMLE
KQGFKTDK

Sequences:

>Translated_248_residues
MNEVLQLLTDHRSIRSYTDEPVSDEQLDLIIQAAQAAPTSINGQQFTVIAVKDKERKKKISELAGGQPWIDQAPVFLLFC
ADFNRAKIALEEYNDTPLEITNGLESVLVGAVDVGIALGTATAAAESMGLGTVPIGAVRGKPDELIELLKLPKYVFPVSG
LVIGHPADRSAKKPRLPQAAVLHHETYQEEDLRTHIEAYDKQMSEYMKKRTDGQETRNWSQGITSYYKQIYYPHIREMLE
KQGFKTDK
>Mature_248_residues
MNEVLQLLTDHRSIRSYTDEPVSDEQLDLIIQAAQAAPTSINGQQFTVIAVKDKERKKKISELAGGQPWIDQAPVFLLFC
ADFNRAKIALEEYNDTPLEITNGLESVLVGAVDVGIALGTATAAAESMGLGTVPIGAVRGKPDELIELLKLPKYVFPVSG
LVIGHPADRSAKKPRLPQAAVLHHETYQEEDLRTHIEAYDKQMSEYMKKRTDGQETRNWSQGITSYYKQIYYPHIREMLE
KQGFKTDK

Specific function: Reduces FMNH(2) to FMN, with NADPH as reductant. It also reduces nitroaromatic compounds, quinones, chromates and azo dyes. It could supply the reduced form of FMN to luciferase-like protein and contribute to the degradation of aromatic compounds [H]

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flavin oxidoreductase frp family [H]

Homologues:

Organism=Escherichia coli, GI1787075, Length=246, Percent_Identity=38.2113821138211, Blast_Score=163, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016446
- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: =1.5.1.29 [H]

Molecular weight: Translated: 27742; Mature: 27742

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEVLQLLTDHRSIRSYTDEPVSDEQLDLIIQAAQAAPTSINGQQFTVIAVKDKERKKKI
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHH
SELAGGQPWIDQAPVFLLFCADFNRAKIALEEYNDTPLEITNGLESVLVGAVDVGIALGT
HHHCCCCCCCCCCCEEEEEECCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATAAAESMGLGTVPIGAVRGKPDELIELLKLPKYVFPVSGLVIGHPADRSAKKPRLPQAA
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCEEEECCCCCCCCCCCCCHHH
VLHHETYQEEDLRTHIEAYDKQMSEYMKKRTDGQETRNWSQGITSYYKQIYYPHIREMLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQGFKTDK
HCCCCCCC
>Mature Secondary Structure
MNEVLQLLTDHRSIRSYTDEPVSDEQLDLIIQAAQAAPTSINGQQFTVIAVKDKERKKKI
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHH
SELAGGQPWIDQAPVFLLFCADFNRAKIALEEYNDTPLEITNGLESVLVGAVDVGIALGT
HHHCCCCCCCCCCCEEEEEECCCCCCEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATAAAESMGLGTVPIGAVRGKPDELIELLKLPKYVFPVSGLVIGHPADRSAKKPRLPQAA
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCCCEEEECCCCCCCCCCCCCHHH
VLHHETYQEEDLRTHIEAYDKQMSEYMKKRTDGQETRNWSQGITSYYKQIYYPHIREMLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQGFKTDK
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]