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The map label for this gene is ycnC [H]

Identifier: 154684879

GI number: 154684879

Start: 408682

End: 409557

Strand: Reverse

Name: ycnC [H]

Synonym: RBAM_004100

Alternate gene names: 154684879

Gene position: 409557-408682 (Counterclockwise)

Preceding gene: 154684880

Following gene: 154684878

Centisome position: 10.45

GC content: 49.43

Gene sequence:

>876_bases
ATGAATGATAAGAAAACGGATATTCTGCTGGCGGCAAGGAAGCTTTTTTCCGGGAAAAGCTTTTCGTCGGTTTCGATGCA
GGCGATCGCAGAGGAGTGCAAAGTCTCCAAAGCGTCTTTATATAAGCTGTTTGAATCAAAGGAAGACCTGCTGTTGGAGC
TGCTCGACTTTAACCAGAAACAGATGGTAGCCGCCGCTTCATTATTGAATGAAGAAACAAGCCTCTCCCCTGAGGAACGG
TTTGCCAAAAAACTGATGGCTGAGCTTGAAGGCTTCAGGCGCAATCAGCAGTTTTTTAATATGCTGATGTACGGAAGCCC
CTCTTCCATTAATGAGCGGGTAAAACGGCATATCCACAGAGCCCGCTCCACCTTTATCTGCTGGCATCGCGATTCACTGA
TTCAGACGTACGGCGAAGACATTATTCCTTATGTATGGGAGCTGGTGATCGTCCTGCAGGGGCTCCTGAGAGAATGCATC
ACGCTGATTAAGCTGGAAAAAGAACCGCTCGCCCTGGAGCCGCTCACGGAGTTTATCATCCGCCATCTCAATCTCATCGT
CGAAAACAGGACAACCGAAACCGCATTGCCTCAGGAGATGATTGACCTTTATATCGCCTCCGCTTCCTCATTTGAGCCGA
AAGACAAAAACGTATTGCTGGCTGAAAGCCTGAAGGAACTGAAAGAAGCGGTCTCAGCCCTTCCGGAGGAAAAATATGAC
GCCGCAGGACTCGCTTCCGCGGCGGCTATGCTGGAGAAAGAATCAGCAGACAAACAGCCGCGGGATTTTCTTATAAAAGC
GCTCATCGGTTATTTGGAGCAGGCCGGACCGCTGCACCAGCCGCTTGCAGCCGTTAAAACATTGCTCAAACTATAA

Upstream 100 bases:

>100_bases
ACACTATGTAAAAATTTTTGTTAATATTTTCATCATATACTCATTGGTTTTCTGTGAACCGATGGGTTTTCTATTGTGAC
GAAAGAAGGAATCTGGGCTT

Downstream 100 bases:

>100_bases
AGAAAGAAGGAATCAGCTTGAATAAGAGTATTGAAACTGCACCATACAACCGCTCTGTCATTGTCGGGATTCTTTTGGCG
GGAGCGTTCGTCGCCATTTT

Product: YcnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNDKKTDILLAARKLFSGKSFSSVSMQAIAEECKVSKASLYKLFESKEDLLLELLDFNQKQMVAAASLLNEETSLSPEER
FAKKLMAELEGFRRNQQFFNMLMYGSPSSINERVKRHIHRARSTFICWHRDSLIQTYGEDIIPYVWELVIVLQGLLRECI
TLIKLEKEPLALEPLTEFIIRHLNLIVENRTTETALPQEMIDLYIASASSFEPKDKNVLLAESLKELKEAVSALPEEKYD
AAGLASAAAMLEKESADKQPRDFLIKALIGYLEQAGPLHQPLAAVKTLLKL

Sequences:

>Translated_291_residues
MNDKKTDILLAARKLFSGKSFSSVSMQAIAEECKVSKASLYKLFESKEDLLLELLDFNQKQMVAAASLLNEETSLSPEER
FAKKLMAELEGFRRNQQFFNMLMYGSPSSINERVKRHIHRARSTFICWHRDSLIQTYGEDIIPYVWELVIVLQGLLRECI
TLIKLEKEPLALEPLTEFIIRHLNLIVENRTTETALPQEMIDLYIASASSFEPKDKNVLLAESLKELKEAVSALPEEKYD
AAGLASAAAMLEKESADKQPRDFLIKALIGYLEQAGPLHQPLAAVKTLLKL
>Mature_291_residues
MNDKKTDILLAARKLFSGKSFSSVSMQAIAEECKVSKASLYKLFESKEDLLLELLDFNQKQMVAAASLLNEETSLSPEER
FAKKLMAELEGFRRNQQFFNMLMYGSPSSINERVKRHIHRARSTFICWHRDSLIQTYGEDIIPYVWELVIVLQGLLRECI
TLIKLEKEPLALEPLTEFIIRHLNLIVENRTTETALPQEMIDLYIASASSFEPKDKNVLLAESLKELKEAVSALPEEKYD
AAGLASAAAMLEKESADKQPRDFLIKALIGYLEQAGPLHQPLAAVKTLLKL

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 32975; Mature: 32975

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDKKTDILLAARKLFSGKSFSSVSMQAIAEECKVSKASLYKLFESKEDLLLELLDFNQK
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMVAAASLLNEETSLSPEERFAKKLMAELEGFRRNQQFFNMLMYGSPSSINERVKRHIHR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ARSTFICWHRDSLIQTYGEDIIPYVWELVIVLQGLLRECITLIKLEKEPLALEPLTEFII
HHHHEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RHLNLIVENRTTETALPQEMIDLYIASASSFEPKDKNVLLAESLKELKEAVSALPEEKYD
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
AAGLASAAAMLEKESADKQPRDFLIKALIGYLEQAGPLHQPLAAVKTLLKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNDKKTDILLAARKLFSGKSFSSVSMQAIAEECKVSKASLYKLFESKEDLLLELLDFNQK
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMVAAASLLNEETSLSPEERFAKKLMAELEGFRRNQQFFNMLMYGSPSSINERVKRHIHR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ARSTFICWHRDSLIQTYGEDIIPYVWELVIVLQGLLRECITLIKLEKEPLALEPLTEFII
HHHHEEEECHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RHLNLIVENRTTETALPQEMIDLYIASASSFEPKDKNVLLAESLKELKEAVSALPEEKYD
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
AAGLASAAAMLEKESADKQPRDFLIKALIGYLEQAGPLHQPLAAVKTLLKL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]