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The map label for this gene is ybbF [H]

Identifier: 154684691

GI number: 154684691

Start: 194410

End: 195777

Strand: Reverse

Name: ybbF [H]

Synonym: RBAM_002170

Alternate gene names: 154684691

Gene position: 195777-194410 (Counterclockwise)

Preceding gene: 154684692

Following gene: 154684690

Centisome position: 5.0

GC content: 50.51

Gene sequence:

>1368_bases
ATGAGCAAAGAGGCATTTTATCAGTCACTGGCCAAAGATATCCTGGACAATTGCGGCGGTTCATCGAATATTTCAGGCTT
TACCCACTGTATGACACGCCTGAGGATTACACCTTTAGATCAGGACAAAACGGATATTGAAGCGCTGAAACGGCTTGACG
GGGTAATAGGCGTCGTCGAAGCCGAAACACTGCAGATCATTCTCGGCACGGGTGTCGTCAATCATGTCGCCGACGCTTTC
GCAAAACTTATGCCATCCGGAAAAAACATTGATTTAAAAGAAGCCGCCTCACGGAAAAAAGCCGATCTCAACAGAAAAAA
CACCACACCCATCAGACTGTTTCTGAGAAAAATATCAAGCATCTTCATTCCCCTTATTCCCGCACTCATTGCATCAGGTT
TAATCACCGGTATTACGAAAGCCGTCATTCAGGCCGGCTGGCTCCCGAAAGAATCCCAAATCGCACTTATTTTAACGGTT
ATCGGTTCAGGCTTATTCGCTTACCTCGGCGTCCTTGTCGGCATCAATGCGGCGAAGGAATTCGGCGGGACACCCGCGAT
GGGCGGCCTTGCGGGCATATTGATCCTTAACCCTGAGATCGCCAATATCAGTTTGTTCGGAGAGAATCTGCTCCCTGGCA
GGGGAGGATTAATCGGCGTTCTTTTCGCTGCGGTTTTTATCGCTTATACCGAACGGTTTATCAGAAAGTACGTCCATCAA
TCCATCGACATTATCGTCACGCCTACATTGTCTTTACTTATCACCGGGCTGGTGACATATGTCGTTTTTATCCCTGCGGG
CGGTTTTATTTCTGATCTGATTACATCAGGTTTATTGTCGCTGCTGAATGTCGGGGGAGTGCTCTCAGGGTTTGTACTGG
GAGCCGCCTTCCTGCCGCTTGTCGTCACCGGCCTGCATCAGGGCTTGACTCCCGTACATTTGGAATTAATCCGATCAATC
GGAGATGACCCGCTCCTTCCGATTCTCGCGATGGGAGGCGCGGGTCAGGTAGGGGCGGCCTTCGCCATCTTTATGAAAAC
AAAAAAAGCCTCATTGAAAAGAGCAATCGGCGGCGGACTTCCATCCGGTCTGCTCGGAATCGGAGAGCCGCTCATCTTCG
GCGTCACGCTCCCGCTCGGCCGGCCGTTTTTGACGGCGTGTTTAGGGGCGGGAATCGGCGGCGCCTTTCAAGCCCATTTT
CAGGTGGCTACTTTTTCAATCGGTGTCTCCGGCCTTCCGCTCTCGTTTCTCGTACAGCCTGCTCAAATCGTTTTGTATAT
CATCGGTCTCTTCATCTCTTACGCGGCGGGCTTTGTCTTCACTTATGCGTTCGGATTTAAGGATGACATGGCTGCTGAAT
TTGAATAA

Upstream 100 bases:

>100_bases
TTACGAGCCCGCGCCGTTTTCATGATCGGCGCAGGCGCTTTTAGGACGCGTTTCAGGCACAGCTCCCCGGGAAAAATCGT
ACGGACAAAGGAGGATCTCC

Downstream 100 bases:

>100_bases
ACCGGGAGGGATCAGAATATGAAAACACTGACAGCCGCCATACTCACAATGGTCATCAGCCTCTCTTTTCTGCCGCAGCA
CAAAGCCGAAGCCCAATCCA

Product: YbbF

Products: NA

Alternate protein names: Phosphotransferase enzyme IIB component; PTS system EIIB component; Permease IIC component; PTS system EIIC component [H]

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSKEAFYQSLAKDILDNCGGSSNISGFTHCMTRLRITPLDQDKTDIEALKRLDGVIGVVEAETLQIILGTGVVNHVADAF
AKLMPSGKNIDLKEAASRKKADLNRKNTTPIRLFLRKISSIFIPLIPALIASGLITGITKAVIQAGWLPKESQIALILTV
IGSGLFAYLGVLVGINAAKEFGGTPAMGGLAGILILNPEIANISLFGENLLPGRGGLIGVLFAAVFIAYTERFIRKYVHQ
SIDIIVTPTLSLLITGLVTYVVFIPAGGFISDLITSGLLSLLNVGGVLSGFVLGAAFLPLVVTGLHQGLTPVHLELIRSI
GDDPLLPILAMGGAGQVGAAFAIFMKTKKASLKRAIGGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGIGGAFQAHF
QVATFSIGVSGLPLSFLVQPAQIVLYIIGLFISYAAGFVFTYAFGFKDDMAAEFE

Sequences:

>Translated_455_residues
MSKEAFYQSLAKDILDNCGGSSNISGFTHCMTRLRITPLDQDKTDIEALKRLDGVIGVVEAETLQIILGTGVVNHVADAF
AKLMPSGKNIDLKEAASRKKADLNRKNTTPIRLFLRKISSIFIPLIPALIASGLITGITKAVIQAGWLPKESQIALILTV
IGSGLFAYLGVLVGINAAKEFGGTPAMGGLAGILILNPEIANISLFGENLLPGRGGLIGVLFAAVFIAYTERFIRKYVHQ
SIDIIVTPTLSLLITGLVTYVVFIPAGGFISDLITSGLLSLLNVGGVLSGFVLGAAFLPLVVTGLHQGLTPVHLELIRSI
GDDPLLPILAMGGAGQVGAAFAIFMKTKKASLKRAIGGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGIGGAFQAHF
QVATFSIGVSGLPLSFLVQPAQIVLYIIGLFISYAAGFVFTYAFGFKDDMAAEFE
>Mature_454_residues
SKEAFYQSLAKDILDNCGGSSNISGFTHCMTRLRITPLDQDKTDIEALKRLDGVIGVVEAETLQIILGTGVVNHVADAFA
KLMPSGKNIDLKEAASRKKADLNRKNTTPIRLFLRKISSIFIPLIPALIASGLITGITKAVIQAGWLPKESQIALILTVI
GSGLFAYLGVLVGINAAKEFGGTPAMGGLAGILILNPEIANISLFGENLLPGRGGLIGVLFAAVFIAYTERFIRKYVHQS
IDIIVTPTLSLLITGLVTYVVFIPAGGFISDLITSGLLSLLNVGGVLSGFVLGAAFLPLVVTGLHQGLTPVHLELIRSIG
DDPLLPILAMGGAGQVGAAFAIFMKTKKASLKRAIGGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGIGGAFQAHFQ
VATFSIGVSGLPLSFLVQPAQIVLYIIGLFISYAAGFVFTYAFGFKDDMAAEFE

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane [H]

COG id: COG1263

COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788769, Length=476, Percent_Identity=36.7647058823529, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1790159, Length=419, Percent_Identity=30.0715990453461, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI2367362, Length=444, Percent_Identity=27.2522522522523, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI48994906, Length=465, Percent_Identity=27.5268817204301, Blast_Score=129, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018113
- InterPro:   IPR001996
- InterPro:   IPR003352
- InterPro:   IPR013013 [H]

Pfam domain/function: PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 47679; Mature: 47548

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEAFYQSLAKDILDNCGGSSNISGFTHCMTRLRITPLDQDKTDIEALKRLDGVIGVVE
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEE
AETLQIILGTGVVNHVADAFAKLMPSGKNIDLKEAASRKKADLNRKNTTPIRLFLRKISS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IFIPLIPALIASGLITGITKAVIQAGWLPKESQIALILTVIGSGLFAYLGVLVGINAAKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
FGGTPAMGGLAGILILNPEIANISLFGENLLPGRGGLIGVLFAAVFIAYTERFIRKYVHQ
CCCCCCCHHHEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
SIDIIVTPTLSLLITGLVTYVVFIPAGGFISDLITSGLLSLLNVGGVLSGFVLGAAFLPL
CCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVTGLHQGLTPVHLELIRSIGDDPLLPILAMGGAGQVGAAFAIFMKTKKASLKRAIGGGL
HHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PSGLLGIGEPLIFGVTLPLGRPFLTACLGAGIGGAFQAHFQVATFSIGVSGLPLSFLVQP
CCCHHHCCCHHHEEEECCCCCHHHHHHHHCCCCCHHHHHEEEEEEEECCCCCCHHHHHHH
AQIVLYIIGLFISYAAGFVFTYAFGFKDDMAAEFE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SKEAFYQSLAKDILDNCGGSSNISGFTHCMTRLRITPLDQDKTDIEALKRLDGVIGVVE
CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEE
AETLQIILGTGVVNHVADAFAKLMPSGKNIDLKEAASRKKADLNRKNTTPIRLFLRKISS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IFIPLIPALIASGLITGITKAVIQAGWLPKESQIALILTVIGSGLFAYLGVLVGINAAKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
FGGTPAMGGLAGILILNPEIANISLFGENLLPGRGGLIGVLFAAVFIAYTERFIRKYVHQ
CCCCCCCHHHEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
SIDIIVTPTLSLLITGLVTYVVFIPAGGFISDLITSGLLSLLNVGGVLSGFVLGAAFLPL
CCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVTGLHQGLTPVHLELIRSIGDDPLLPILAMGGAGQVGAAFAIFMKTKKASLKRAIGGGL
HHHHHHCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PSGLLGIGEPLIFGVTLPLGRPFLTACLGAGIGGAFQAHFQVATFSIGVSGLPLSFLVQP
CCCHHHCCCHHHEEEECCCCCHHHHHHHHCCCCCHHHHHEEEEEEEECCCCCCHHHHHHH
AQIVLYIIGLFISYAAGFVFTYAFGFKDDMAAEFE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]