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The map label for this gene is ybbE [H]

Identifier: 154684690

GI number: 154684690

Start: 193108

End: 194391

Strand: Reverse

Name: ybbE [H]

Synonym: RBAM_002160

Alternate gene names: 154684690

Gene position: 194391-193108 (Counterclockwise)

Preceding gene: 154684691

Following gene: 154684689

Centisome position: 4.96

GC content: 47.74

Gene sequence:

>1284_bases
ATGAAAACACTGACAGCCGCCATACTCACAATGGTCATCAGCCTCTCTTTTCTGCCGCAGCACAAAGCCGAAGCCCAATC
CAAATTATACGACGCAGCAAAGCTCAGAAAGGTTGATCAAATGATTGAAAAAGACATCGCAGCAGGATTCCCCGGAGCCG
TCCTCGTCGTCGTAAAGGACGGACGGGTGATCAAAAAGAAAGCATACGGCTACAGCAAAAAATATGACGGGAACACCCTT
TTATCCCGTCCGAAAAAAATGAAAACATCAACCATGTTTGATCTAGCTTCCAATACAAAAATGTACGCGGCGAATTTTGC
ATTACAGCGACTCGTCAGCCAGGGAAAGCTTGATGTGTATCAAAAAGTCTCGGCTTACCTTCCTGATTTCAAAGACAGAA
AAAGCGATCCGATTCAAGAAAAAGACCGCATTCGCGTCATCGATGTGCTCCAGCATCAATCCGGTCTGCCGGCAAGCTTT
TATTTCTATCAGCCGGACACCGCAGGCCCTTTGTATTCACAAGAACGGGATAAAACGATCCGTTTTCTCACTCAAATCCC
GCTTGCATACAAACCGGGAACAAAACACGTATACAGCGATATCGGTTACATGCTTCTCGGCTGCATCATTGAAAACATAA
CCGGAAAAACCCTTGATGCCTATGCGGAACAAGAACTGTACAAACCGCTGAAACTGACGCACACACTGTTCAATCCGCTG
CAAAAAGGTTTTAAAGAAAAAGCATTCGCAGCTACTGAACGTTTAGGCAACACACGTGACGGAGTCATCCATTTTCCTCA
CATCAGGACGTATACGCTGCAGGGGGAAGTTCACGATGAAAAAGCATTTTACTCAATGGGAGGGGTGTCCGGTCACGCCG
GGCTGTTTTCCAGAGCTGATGACATGGCCGTCCTTCTTCAAGTCATGCTGAACGGAGGCAGTTATAAACACGTTTCTCTC
TTCAATAAAAGGACGGCCGATTTGTTCACAACGGCGGCATCCTCTGATCCGACTTTCGCTCTCGGCTGGCGGAAAAACGG
CAGCCCGGATATGGAGTGGATGTTCGGCCCTTATGCAAGCTGGCAGGCATATGGCCATACAGGATGGACCGGCACCATCA
CGATTATTGATCCCGCTTATAAGCTGGGGATCGCACTTTTGACCAATAAAAAGCATTCCCCCGTCGTCAGTCCCGGTGAA
AACCCGAATGTTTTTGAAGGGGATCTTTTTCCGACCGGAAGCTACGGCCGCGTCATAAAAACGATTTATGAAGCCATTGA
ATGA

Upstream 100 bases:

>100_bases
TCTCTTCATCTCTTACGCGGCGGGCTTTGTCTTCACTTATGCGTTCGGATTTAAGGATGACATGGCTGCTGAATTTGAAT
AAACCGGGAGGGATCAGAAT

Downstream 100 bases:

>100_bases
CAACCCATGTCTTTTGTCCAAACTATGACGGCAGGAGGGCACCATCATGAAACTTGTCATCTCAGCTGTATTACTGTTGT
TCATTGTTTTCGGCACGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MKTLTAAILTMVISLSFLPQHKAEAQSKLYDAAKLRKVDQMIEKDIAAGFPGAVLVVVKDGRVIKKKAYGYSKKYDGNTL
LSRPKKMKTSTMFDLASNTKMYAANFALQRLVSQGKLDVYQKVSAYLPDFKDRKSDPIQEKDRIRVIDVLQHQSGLPASF
YFYQPDTAGPLYSQERDKTIRFLTQIPLAYKPGTKHVYSDIGYMLLGCIIENITGKTLDAYAEQELYKPLKLTHTLFNPL
QKGFKEKAFAATERLGNTRDGVIHFPHIRTYTLQGEVHDEKAFYSMGGVSGHAGLFSRADDMAVLLQVMLNGGSYKHVSL
FNKRTADLFTTAASSDPTFALGWRKNGSPDMEWMFGPYASWQAYGHTGWTGTITIIDPAYKLGIALLTNKKHSPVVSPGE
NPNVFEGDLFPTGSYGRVIKTIYEAIE

Sequences:

>Translated_427_residues
MKTLTAAILTMVISLSFLPQHKAEAQSKLYDAAKLRKVDQMIEKDIAAGFPGAVLVVVKDGRVIKKKAYGYSKKYDGNTL
LSRPKKMKTSTMFDLASNTKMYAANFALQRLVSQGKLDVYQKVSAYLPDFKDRKSDPIQEKDRIRVIDVLQHQSGLPASF
YFYQPDTAGPLYSQERDKTIRFLTQIPLAYKPGTKHVYSDIGYMLLGCIIENITGKTLDAYAEQELYKPLKLTHTLFNPL
QKGFKEKAFAATERLGNTRDGVIHFPHIRTYTLQGEVHDEKAFYSMGGVSGHAGLFSRADDMAVLLQVMLNGGSYKHVSL
FNKRTADLFTTAASSDPTFALGWRKNGSPDMEWMFGPYASWQAYGHTGWTGTITIIDPAYKLGIALLTNKKHSPVVSPGE
NPNVFEGDLFPTGSYGRVIKTIYEAIE
>Mature_427_residues
MKTLTAAILTMVISLSFLPQHKAEAQSKLYDAAKLRKVDQMIEKDIAAGFPGAVLVVVKDGRVIKKKAYGYSKKYDGNTL
LSRPKKMKTSTMFDLASNTKMYAANFALQRLVSQGKLDVYQKVSAYLPDFKDRKSDPIQEKDRIRVIDVLQHQSGLPASF
YFYQPDTAGPLYSQERDKTIRFLTQIPLAYKPGTKHVYSDIGYMLLGCIIENITGKTLDAYAEQELYKPLKLTHTLFNPL
QKGFKEKAFAATERLGNTRDGVIHFPHIRTYTLQGEVHDEKAFYSMGGVSGHAGLFSRADDMAVLLQVMLNGGSYKHVSL
FNKRTADLFTTAASSDPTFALGWRKNGSPDMEWMFGPYASWQAYGHTGWTGTITIIDPAYKLGIALLTNKKHSPVVSPGE
NPNVFEGDLFPTGSYGRVIKTIYEAIE

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0214 family [H]

Homologues:

Organism=Escherichia coli, GI87082101, Length=398, Percent_Identity=52.5125628140703, Blast_Score=460, Evalue=1e-131,
Organism=Caenorhabditis elegans, GI115533026, Length=400, Percent_Identity=23.5, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR022849 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 47693; Mature: 47693

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLTAAILTMVISLSFLPQHKAEAQSKLYDAAKLRKVDQMIEKDIAAGFPGAVLVVVKD
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
GRVIKKKAYGYSKKYDGNTLLSRPKKMKTSTMFDLASNTKMYAANFALQRLVSQGKLDVY
CCEEEHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCHHHH
QKVSAYLPDFKDRKSDPIQEKDRIRVIDVLQHQSGLPASFYFYQPDTAGPLYSQERDKTI
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHH
RFLTQIPLAYKPGTKHVYSDIGYMLLGCIIENITGKTLDAYAEQELYKPLKLTHTLFNPL
HHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKGFKEKAFAATERLGNTRDGVIHFPHIRTYTLQGEVHDEKAFYSMGGVSGHAGLFSRAD
HHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCH
DMAVLLQVMLNGGSYKHVSLFNKRTADLFTTAASSDPTFALGWRKNGSPDMEWMFGPYAS
HHHHHHHHHHCCCCEEEEEHHCCHHHHHHEECCCCCCCEEEEECCCCCCCCCEEECCCCC
WQAYGHTGWTGTITIIDPAYKLGIALLTNKKHSPVVSPGENPNVFEGDLFPTGSYGRVIK
CEECCCCCCEEEEEEECCHHHHCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHH
TIYEAIE
HHHHHHC
>Mature Secondary Structure
MKTLTAAILTMVISLSFLPQHKAEAQSKLYDAAKLRKVDQMIEKDIAAGFPGAVLVVVKD
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
GRVIKKKAYGYSKKYDGNTLLSRPKKMKTSTMFDLASNTKMYAANFALQRLVSQGKLDVY
CCEEEHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCHHHH
QKVSAYLPDFKDRKSDPIQEKDRIRVIDVLQHQSGLPASFYFYQPDTAGPLYSQERDKTI
HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHH
RFLTQIPLAYKPGTKHVYSDIGYMLLGCIIENITGKTLDAYAEQELYKPLKLTHTLFNPL
HHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKGFKEKAFAATERLGNTRDGVIHFPHIRTYTLQGEVHDEKAFYSMGGVSGHAGLFSRAD
HHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCH
DMAVLLQVMLNGGSYKHVSLFNKRTADLFTTAASSDPTFALGWRKNGSPDMEWMFGPYAS
HHHHHHHHHHCCCCEEEEEHHCCHHHHHHEECCCCCCCEEEEECCCCCCCCCEEECCCCC
WQAYGHTGWTGTITIIDPAYKLGIALLTNKKHSPVVSPGENPNVFEGDLFPTGSYGRVIK
CEECCCCCCEEEEEEECCHHHHCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHH
TIYEAIE
HHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]