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The map label for this gene is ybbD [H]

Identifier: 154684689

GI number: 154684689

Start: 191148

End: 193061

Strand: Reverse

Name: ybbD [H]

Synonym: RBAM_002150

Alternate gene names: 154684689

Gene position: 193061-191148 (Counterclockwise)

Preceding gene: 154684690

Following gene: 154684688

Centisome position: 4.93

GC content: 48.33

Gene sequence:

>1914_bases
ATGAAACTTGTCATCTCAGCTGTATTACTGTTGTTCATTGTTTTCGGCACGCATCATGTATCGACAAAACCGGACATTCC
GTCACAGGCGGAACAAGCGGTATCCCGTATGACATTAGATGAAAAATTAGGGCAGATGCTCATGCCTGATTTTCGCAATT
GGCAAAAAAAGGGGCAGTCATCACCTGAGGCTCTTACCCAAATGAATAAAGAAGTCGCAGGGCTTATTCAAAAGTACCGG
TTCGGCGGCGTTATCTTATTTGCAGAAAATGTAAAAAACACTGAGCAAACGGTACGCCTGACAGATGCCTTTCAAAAGGC
GAGCCCTGACATTCCGCTATTATTAAGCATTGATCAGGAGGGCGGCATCGTAACTAGACTTGGTGAGGGCACTCATTTCC
CAGGCAATATGGCGCTCGGAGCCGCTAGAAAAACAGCCTACGCGTCCCAGACCGGCGCCATTATCGGGAAAGAACTGAAA
GCACTCGGCATTAATACGAACTTCGCTCCCGTTCTCGATATCAATAATAATCCCGGAAACCCTGTCATCGGCGTCAGGTC
GTTCAGTTCAGACCGAGATCTGACAGCTTCACTCGGTCTTGCCTCAATGAAGGCTCAGCAAAAGCAGGATGTCGCTGCCG
CCGTCAAACATTTCCCGGGACACGGCGACACGGATGTCGACAGCCACTACGGTCTTCCGCTTGTCACCCACAATCAAGAA
AGGCTGCGTCAGATTGAACTTTATCCGTTCCGGAAGGCCATTCAGGCCGGAGCTGATATGATCATGACAGCCCATGTGCA
ATTTCCCGCGTTTGACGATACAACCTATAAAAGCAAGCTGGACGGTTCAGACATCCTCGTACCCGCCACACTCTCGAAAA
AAGTGATGACTCATCTTCTCCGTGGAGAAATGGGATTTAACGGCGTCATCGTTACGGATGCATTAAATATGAAAGCCATT
GCCGATCATTTCGGCCAGGAAGAGGCGGTCGTCATGGCCGTAAAAGCAGGAGTCGATATTGCCCTGATGCCGGCCCAAGT
GACATCGCTGCAAACGGAAAACCGCTTTGCCCGGGTTCATTCCGCTTTAAAAAAGGCGGTACAAAAAGGGGAAATTCCGC
TGCAGCAAATTAACAAATCAGCGGAACGCATCATTTCCCTGAAAATAAAACGAGGGATATATCCCGCCCCGAAAAAGACA
AATCTGAAAAAGAAGATTGCAAAAGCAAAGAAAACCGTCGGCAGCAAAAATCATCTGAAAGCTGAAAAACAAATCGCGGA
AAGGTCCGTCACCGTCTTACAAAACAAAAACCGCACGCTCCCATTCAAACCGAAAAAGAACAGCCGCGTTCTCATTGCCG
CTCCATATGAAGATCAAACAGCGTCAATGGAACAAACCATTCGGCAGCTCATCAAGAAGAAAAAAATCCGGCCGGTAACC
ATCAGTAAAATGAACTTCGCCGAGCGCACATTTCATGATGAACACAAAAAGCAGATATCTGACGCTGATTACGTGATTAC
AGGCTCATATGTTGTGAAAAATGATCCTGTCGTAAACGACGGCGTGATTGACGATTCCGTCACAGATCCCGGCAAGTGGA
CGACTGCATTTCCGCGGGCCGTCATGAAAGCCGCACAATCGAACCAAAAACCCTTTGTGCTGATGAGCCTGCGTAATCCA
TATGACGCTGCGAACTTTGAAGAAGCTGAAGCCCTTATCGCAGTCTACGGCTTTAAAGGATATACAGACGGACAATTTCT
CCAGCCAAACATTCCGGCAGGCGTTGAAGCGATATTCGGACAGACAAAACCGCAAGGCAGGCTGCCCGCTGACATTCCTT
CCGTCACGCATCCGGGAACGACACTGTATCCTTATGGTTTCGGTATCAATCTGAAGACCGGAAAACCGCTTTAA

Upstream 100 bases:

>100_bases
CCGACCGGAAGCTACGGCCGCGTCATAAAAACGATTTATGAAGCCATTGAATGACAACCCATGTCTTTTGTCCAAACTAT
GACGGCAGGAGGGCACCATC

Downstream 100 bases:

>100_bases
ACAGGAGGACTGATCATGAAAACACAAACGGCTGCGCTTCTTGCCGGATTAGTCGTCATCAGTGCTATGACGGCAGTCTC
GGCTGCTTCTGACAGAAACC

Product: YbbD

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MKLVISAVLLLFIVFGTHHVSTKPDIPSQAEQAVSRMTLDEKLGQMLMPDFRNWQKKGQSSPEALTQMNKEVAGLIQKYR
FGGVILFAENVKNTEQTVRLTDAFQKASPDIPLLLSIDQEGGIVTRLGEGTHFPGNMALGAARKTAYASQTGAIIGKELK
ALGINTNFAPVLDINNNPGNPVIGVRSFSSDRDLTASLGLASMKAQQKQDVAAAVKHFPGHGDTDVDSHYGLPLVTHNQE
RLRQIELYPFRKAIQAGADMIMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTHLLRGEMGFNGVIVTDALNMKAI
ADHFGQEEAVVMAVKAGVDIALMPAQVTSLQTENRFARVHSALKKAVQKGEIPLQQINKSAERIISLKIKRGIYPAPKKT
NLKKKIAKAKKTVGSKNHLKAEKQIAERSVTVLQNKNRTLPFKPKKNSRVLIAAPYEDQTASMEQTIRQLIKKKKIRPVT
ISKMNFAERTFHDEHKKQISDADYVITGSYVVKNDPVVNDGVIDDSVTDPGKWTTAFPRAVMKAAQSNQKPFVLMSLRNP
YDAANFEEAEALIAVYGFKGYTDGQFLQPNIPAGVEAIFGQTKPQGRLPADIPSVTHPGTTLYPYGFGINLKTGKPL

Sequences:

>Translated_637_residues
MKLVISAVLLLFIVFGTHHVSTKPDIPSQAEQAVSRMTLDEKLGQMLMPDFRNWQKKGQSSPEALTQMNKEVAGLIQKYR
FGGVILFAENVKNTEQTVRLTDAFQKASPDIPLLLSIDQEGGIVTRLGEGTHFPGNMALGAARKTAYASQTGAIIGKELK
ALGINTNFAPVLDINNNPGNPVIGVRSFSSDRDLTASLGLASMKAQQKQDVAAAVKHFPGHGDTDVDSHYGLPLVTHNQE
RLRQIELYPFRKAIQAGADMIMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTHLLRGEMGFNGVIVTDALNMKAI
ADHFGQEEAVVMAVKAGVDIALMPAQVTSLQTENRFARVHSALKKAVQKGEIPLQQINKSAERIISLKIKRGIYPAPKKT
NLKKKIAKAKKTVGSKNHLKAEKQIAERSVTVLQNKNRTLPFKPKKNSRVLIAAPYEDQTASMEQTIRQLIKKKKIRPVT
ISKMNFAERTFHDEHKKQISDADYVITGSYVVKNDPVVNDGVIDDSVTDPGKWTTAFPRAVMKAAQSNQKPFVLMSLRNP
YDAANFEEAEALIAVYGFKGYTDGQFLQPNIPAGVEAIFGQTKPQGRLPADIPSVTHPGTTLYPYGFGINLKTGKPL
>Mature_637_residues
MKLVISAVLLLFIVFGTHHVSTKPDIPSQAEQAVSRMTLDEKLGQMLMPDFRNWQKKGQSSPEALTQMNKEVAGLIQKYR
FGGVILFAENVKNTEQTVRLTDAFQKASPDIPLLLSIDQEGGIVTRLGEGTHFPGNMALGAARKTAYASQTGAIIGKELK
ALGINTNFAPVLDINNNPGNPVIGVRSFSSDRDLTASLGLASMKAQQKQDVAAAVKHFPGHGDTDVDSHYGLPLVTHNQE
RLRQIELYPFRKAIQAGADMIMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTHLLRGEMGFNGVIVTDALNMKAI
ADHFGQEEAVVMAVKAGVDIALMPAQVTSLQTENRFARVHSALKKAVQKGEIPLQQINKSAERIISLKIKRGIYPAPKKT
NLKKKIAKAKKTVGSKNHLKAEKQIAERSVTVLQNKNRTLPFKPKKNSRVLIAAPYEDQTASMEQTIRQLIKKKKIRPVT
ISKMNFAERTFHDEHKKQISDADYVITGSYVVKNDPVVNDGVIDDSVTDPGKWTTAFPRAVMKAAQSNQKPFVLMSLRNP
YDAANFEEAEALIAVYGFKGYTDGQFLQPNIPAGVEAIFGQTKPQGRLPADIPSVTHPGTTLYPYGFGINLKTGKPL

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=268, Percent_Identity=30.2238805970149, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI1788453, Length=673, Percent_Identity=22.2882615156018, Blast_Score=102, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 69869; Mature: 69869

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVISAVLLLFIVFGTHHVSTKPDIPSQAEQAVSRMTLDEKLGQMLMPDFRNWQKKGQS
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
SPEALTQMNKEVAGLIQKYRFGGVILFAENVKNTEQTVRLTDAFQKASPDIPLLLSIDQE
CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
GGIVTRLGEGTHFPGNMALGAARKTAYASQTGAIIGKELKALGINTNFAPVLDINNNPGN
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHCHHHEEECCCCCEEEEECCCCCCC
PVIGVRSFSSDRDLTASLGLASMKAQQKQDVAAAVKHFPGHGDTDVDSHYGLPLVTHNQE
CEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHH
RLRQIELYPFRKAIQAGADMIMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTHLL
HHHEEHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHCCCCCCCEEEEHHHHHHHHHHHH
RGEMGFNGVIVTDALNMKAIADHFGQEEAVVMAVKAGVDIALMPAQVTSLQTENRFARVH
HCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHH
SALKKAVQKGEIPLQQINKSAERIISLKIKRGIYPAPKKTNLKKKIAKAKKTVGSKNHLK
HHHHHHHHHCCCCHHHHHHHHHHHEEEHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
AEKQIAERSVTVLQNKNRTLPFKPKKNSRVLIAAPYEDQTASMEQTIRQLIKKKKIRPVT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
ISKMNFAERTFHDEHKKQISDADYVITGSYVVKNDPVVNDGVIDDSVTDPGKWTTAFPRA
EECCCHHHHHHHHHHHHHCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
VMKAAQSNQKPFVLMSLRNPYDAANFEEAEALIAVYGFKGYTDGQFLQPNIPAGVEAIFG
HHHHHHCCCCCEEEEEECCCCCCCCCHHHHEEEEEECCCCCCCCCEECCCCCCCHHHHHC
QTKPQGRLPADIPSVTHPGTTLYPYGFGINLKTGKPL
CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCC
>Mature Secondary Structure
MKLVISAVLLLFIVFGTHHVSTKPDIPSQAEQAVSRMTLDEKLGQMLMPDFRNWQKKGQS
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
SPEALTQMNKEVAGLIQKYRFGGVILFAENVKNTEQTVRLTDAFQKASPDIPLLLSIDQE
CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
GGIVTRLGEGTHFPGNMALGAARKTAYASQTGAIIGKELKALGINTNFAPVLDINNNPGN
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHCHHHEEECCCCCEEEEECCCCCCC
PVIGVRSFSSDRDLTASLGLASMKAQQKQDVAAAVKHFPGHGDTDVDSHYGLPLVTHNQE
CEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHH
RLRQIELYPFRKAIQAGADMIMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTHLL
HHHEEHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHCCCCCCCEEEEHHHHHHHHHHHH
RGEMGFNGVIVTDALNMKAIADHFGQEEAVVMAVKAGVDIALMPAQVTSLQTENRFARVH
HCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHH
SALKKAVQKGEIPLQQINKSAERIISLKIKRGIYPAPKKTNLKKKIAKAKKTVGSKNHLK
HHHHHHHHHCCCCHHHHHHHHHHHEEEHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
AEKQIAERSVTVLQNKNRTLPFKPKKNSRVLIAAPYEDQTASMEQTIRQLIKKKKIRPVT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE
ISKMNFAERTFHDEHKKQISDADYVITGSYVVKNDPVVNDGVIDDSVTDPGKWTTAFPRA
EECCCHHHHHHHHHHHHHCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH
VMKAAQSNQKPFVLMSLRNPYDAANFEEAEALIAVYGFKGYTDGQFLQPNIPAGVEAIFG
HHHHHHCCCCCEEEEEECCCCCCCCCHHHHEEEEEECCCCCCCCCEECCCCCCCHHHHHC
QTKPQGRLPADIPSVTHPGTTLYPYGFGINLKTGKPL
CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]