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The map label for this gene is ybbC [H]

Identifier: 154684688

GI number: 154684688

Start: 189888

End: 191132

Strand: Reverse

Name: ybbC [H]

Synonym: RBAM_002140

Alternate gene names: 154684688

Gene position: 191132-189888 (Counterclockwise)

Preceding gene: 154684689

Following gene: 154684687

Centisome position: 4.88

GC content: 49.72

Gene sequence:

>1245_bases
ATGAAAACACAAACGGCTGCGCTTCTTGCCGGATTAGTCGTCATCAGTGCTATGACGGCAGTCTCGGCTGCTTCTGACAG
AAACCTTCATACCGCCAAGAAACCAAGCATCCAAACAGGCATCGACCGCCTGCTGAAAGATTATAAACAGGAACTGAAGG
GAAAAAGGGTCGGGCTGATCACCAACCCGACCGGTGTGAACAATTCATTGAAAAGCAGCGTTGACGTGCTGTATGAGGCA
CCAGACATCCACTTGACGGCATTATTCGGACCGGAGCACGGTGTCCGCGGCGATGCTCAGGCCGGAGACAAAGTCACATC
CTATATAGACGAAAAAACAGGGCTTCCCGTCTACAGCCTGTACGGGGAAACGAGGAAACCGACGCCTGACATGCTGAAAG
ATACAGATGTACTGATTTTCGATATTCAGGATGTCGGAACGCGATACTACACCTACATTTATACAATGGCCTATGCCATG
GAAGCGGCAAAAGAAAAAGGCATTCCTTTTTATGTATTGGACCGGCCGAATCCGCAAGGCGGACGAAATCCAGACGGCCC
GGTTCTTGAACCGGATTACGCTTCATTTGTCGGACTGTATCCGATCCCGCTGAAGCACGGCATGACGATCGGTGAGCTTG
CTCTTTTATTCAATAAAGAGTTTCATATTGGCGCCGACCTCACCGTCGTAAAAATGAAGCGCTGGAAGCGGACGATGACG
ATTGAAGATACCGGTCTGCCGTTCGTCCTCCCTTCGCCTAATATCCCGACCCCGGACAGCATATTCGCATATTCGGCGAC
AGGACTAATCGAAGGCACAAACGTATCCGAAGGAAGGGGCACGACAAAGCCGTTTGAACTGATCGGCGCGCCTTATATGA
AAAGCACCGAGCTCGAAGAACGCCTGAACAGTCTCAAGCTTCCGGGCGTCACCTTCAGAGCCGCATCATTTATCCCCAGC
TTCTCCAAGCACCAGAGCAAGCTGTGCCACGGCGTACAAGTCTACGTAACAAACAGAAACACATTTGAAGCGGCAAAAAC
AGGGCTCTCCATTCTGAAAACCATGCATGACTTATATCCGAATGACTTTTTATTCTTGCCGACAGGCTCTTTTGACAAGC
TGATCGGTAACGGCTGGGTACGCAAAAAAATAGAAAAAGGCGCTTCCATTGAAGACATCACCGGCACATATCAACGCCGG
CTGGACCAATTCAAAACTCTAAGAAAACAATACCTCATATACTGA

Upstream 100 bases:

>100_bases
TGACATTCCTTCCGTCACGCATCCGGGAACGACACTGTATCCTTATGGTTTCGGTATCAATCTGAAGACCGGAAAACCGC
TTTAAACAGGAGGACTGATC

Downstream 100 bases:

>100_bases
CAACATTCGTGTTACACGTGTAACATTTTGACGCATTTCACATTTCCGCTTTTTATAGGAAAACATTCATTTATTTGGTA
CAATTTAAATGATAACAGTT

Product: YbbC

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKTQTAALLAGLVVISAMTAVSAASDRNLHTAKKPSIQTGIDRLLKDYKQELKGKRVGLITNPTGVNNSLKSSVDVLYEA
PDIHLTALFGPEHGVRGDAQAGDKVTSYIDEKTGLPVYSLYGETRKPTPDMLKDTDVLIFDIQDVGTRYYTYIYTMAYAM
EAAKEKGIPFYVLDRPNPQGGRNPDGPVLEPDYASFVGLYPIPLKHGMTIGELALLFNKEFHIGADLTVVKMKRWKRTMT
IEDTGLPFVLPSPNIPTPDSIFAYSATGLIEGTNVSEGRGTTKPFELIGAPYMKSTELEERLNSLKLPGVTFRAASFIPS
FSKHQSKLCHGVQVYVTNRNTFEAAKTGLSILKTMHDLYPNDFLFLPTGSFDKLIGNGWVRKKIEKGASIEDITGTYQRR
LDQFKTLRKQYLIY

Sequences:

>Translated_414_residues
MKTQTAALLAGLVVISAMTAVSAASDRNLHTAKKPSIQTGIDRLLKDYKQELKGKRVGLITNPTGVNNSLKSSVDVLYEA
PDIHLTALFGPEHGVRGDAQAGDKVTSYIDEKTGLPVYSLYGETRKPTPDMLKDTDVLIFDIQDVGTRYYTYIYTMAYAM
EAAKEKGIPFYVLDRPNPQGGRNPDGPVLEPDYASFVGLYPIPLKHGMTIGELALLFNKEFHIGADLTVVKMKRWKRTMT
IEDTGLPFVLPSPNIPTPDSIFAYSATGLIEGTNVSEGRGTTKPFELIGAPYMKSTELEERLNSLKLPGVTFRAASFIPS
FSKHQSKLCHGVQVYVTNRNTFEAAKTGLSILKTMHDLYPNDFLFLPTGSFDKLIGNGWVRKKIEKGASIEDITGTYQRR
LDQFKTLRKQYLIY
>Mature_414_residues
MKTQTAALLAGLVVISAMTAVSAASDRNLHTAKKPSIQTGIDRLLKDYKQELKGKRVGLITNPTGVNNSLKSSVDVLYEA
PDIHLTALFGPEHGVRGDAQAGDKVTSYIDEKTGLPVYSLYGETRKPTPDMLKDTDVLIFDIQDVGTRYYTYIYTMAYAM
EAAKEKGIPFYVLDRPNPQGGRNPDGPVLEPDYASFVGLYPIPLKHGMTIGELALLFNKEFHIGADLTVVKMKRWKRTMT
IEDTGLPFVLPSPNIPTPDSIFAYSATGLIEGTNVSEGRGTTKPFELIGAPYMKSTELEERLNSLKLPGVTFRAASFIPS
FSKHQSKLCHGVQVYVTNRNTFEAAKTGLSILKTMHDLYPNDFLFLPTGSFDKLIGNGWVRKKIEKGASIEDITGTYQRR
LDQFKTLRKQYLIY

Specific function: Unknown

COG id: COG3876

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008302 [H]

Pfam domain/function: PF07075 DUF1343 [H]

EC number: NA

Molecular weight: Translated: 45920; Mature: 45920

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQTAALLAGLVVISAMTAVSAASDRNLHTAKKPSIQTGIDRLLKDYKQELKGKRVGLI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
TNPTGVNNSLKSSVDVLYEAPDIHLTALFGPEHGVRGDAQAGDKVTSYIDEKTGLPVYSL
ECCCCCCHHHHHHHHHEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
YGETRKPTPDMLKDTDVLIFDIQDVGTRYYTYIYTMAYAMEAAKEKGIPFYVLDRPNPQG
CCCCCCCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
GRNPDGPVLEPDYASFVGLYPIPLKHGMTIGELALLFNKEFHIGADLTVVKMKRWKRTMT
CCCCCCCCCCCCHHHHHCCCCCCHHCCCCHHHHHHHHCCCEECCCCEEEEEEHHHHHEEE
IEDTGLPFVLPSPNIPTPDSIFAYSATGLIEGTNVSEGRGTTKPFELIGAPYMKSTELEE
EECCCCEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCHHHHCCCCCCHHHHHH
RLNSLKLPGVTFRAASFIPSFSKHQSKLCHGVQVYVTNRNTFEAAKTGLSILKTMHDLYP
HHHHCCCCCCEEHHHHHCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCC
NDFLFLPTGSFDKLIGNGWVRKKIEKGASIEDITGTYQRRLDQFKTLRKQYLIY
CCEEEEECCCHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTQTAALLAGLVVISAMTAVSAASDRNLHTAKKPSIQTGIDRLLKDYKQELKGKRVGLI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
TNPTGVNNSLKSSVDVLYEAPDIHLTALFGPEHGVRGDAQAGDKVTSYIDEKTGLPVYSL
ECCCCCCHHHHHHHHHEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
YGETRKPTPDMLKDTDVLIFDIQDVGTRYYTYIYTMAYAMEAAKEKGIPFYVLDRPNPQG
CCCCCCCCHHHHCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
GRNPDGPVLEPDYASFVGLYPIPLKHGMTIGELALLFNKEFHIGADLTVVKMKRWKRTMT
CCCCCCCCCCCCHHHHHCCCCCCHHCCCCHHHHHHHHCCCEECCCCEEEEEEHHHHHEEE
IEDTGLPFVLPSPNIPTPDSIFAYSATGLIEGTNVSEGRGTTKPFELIGAPYMKSTELEE
EECCCCEEEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCHHHHCCCCCCHHHHHH
RLNSLKLPGVTFRAASFIPSFSKHQSKLCHGVQVYVTNRNTFEAAKTGLSILKTMHDLYP
HHHHCCCCCCEEHHHHHCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCC
NDFLFLPTGSFDKLIGNGWVRKKIEKGASIEDITGTYQRRLDQFKTLRKQYLIY
CCEEEEECCCHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]