| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
Click here to switch to the map view.
The map label for this gene is xanB [H]
Identifier: 154247477
GI number: 154247477
Start: 3961079
End: 3962530
Strand: Reverse
Name: xanB [H]
Synonym: Xaut_3550
Alternate gene names: 154247477
Gene position: 3962530-3961079 (Counterclockwise)
Preceding gene: 154247478
Following gene: 154247475
Centisome position: 74.64
GC content: 67.98
Gene sequence:
>1452_bases ATGACCACTTCGTCCACCGTCACCTCGAAGTCGGCCAGCGGAAAGATCGTCCCGGTCATTCTGGCCGGCGGTTCTGGAAC GCGGCTGTGGCCGCTCTCGCGCAACAGCCTGCCGAAGCAGTTCCTGCCGCTGGCCACCGAAAACACCATGTTCCAGGACA CGCTGCTGCGCGCGGCGCCCGGCGCCGTGTTCGCCGATCCGGTGGTGGTGGCCAACGAGGAATTCCGCTTCTTCGCCCAG CGGCAGGCCCGGGCCGTCGGCATCGACGCCACCGTCATGCTGGAGCCAGCCCGCCGCGACAGCGCGCCCGCCCTCATCGC GGCGGCGGTCTGGGTGGCCGAGACCTACGGTCCGGAAACGCTGGTGCTGGCGCTCGCCTCCGACCATGTGGTGCTCGACC CGGCCGGCTTCGTGAAGACGGTGGAGATCGGCGCGGAGGCCGCCCGCCTCGGCCGCATCGTCACCTTCGGCATCGAGCCC ACCGAGCCGCGTACGAGCTACGGCTACATCCGCCTCGGCGCCCAGATCGACGAACGCGGGTCCTATGAGGTGGATTCCTT CGTGGAGAAGCCGGATCGCGCCACGGCCGAGCGCTATGTCGCTGCCGGCTACCTCTGGAACTCGGGCAACTTCCTGTTCC CGGCAGGCCTGCTGCTGAAGGAGGCGGACGTGTTCGAGCCGGCCATCGCCGATGCCGCCCGCGCGGCCGTCGCCGAGGCC AAGTCCGACCTCGGCTTCCTGCGCCTCGACCCCGCCGCCTTCAAGTCCTCGCCGTCGAAGTCCATCGACTTCGCAGTGCT GGAGCGCACCCGCCACGCCGCGGTGGTGCGCGGCAGCTTTGGCTGGTCGGACGTGGGCTCCTGGGACGCCCTGCACGAGA TCGGGAACCAGGACGAGCGGGGCAATGTCACCGTCGGCACGGTGCAGCTTCTCGACAGCAGCAATTCCTTCGTGCGTTCG GACGGCCCGCTGGTGACGGCCATCGGCCTCGACGGCGTCTCGGTGATCGCCACCGAGGATGCAGTGCTGGTGATGCCCTC GAACCGCAGCCAGGACGTGAAGGCGCTGGTCTCGGCGCTCAAGGACTCCAACCGCAAGGAAGTGGAGGAGCACCTCACCA TCCACCGGCCCTGGGGCACCTACCAGACCGTGTGCAAGGGCGATCGCTTCCAGGTGAAGAAGATTGTGGTGGAGCCGGGC GGCATCCTGTCCCTGCAGAAGCACCATCACCGGGCCGAGCACTGGGTGGTGGTGCGCGGCACCGCCGAGGTGACGGTGGC GGATCGCAGCTACATGGTGCACGAGAACGAATCCACCTACATCCCTATCGGCAGCGTGCACCGGCTCGGCAATCCCGGCC GCATTCCGCTCGAGCTGATCGAGGTGCAGACCGGCTCTTATCTCGGCGAGGATGATATCCACCGCTTCGAGGACATCTAC CAGCGCGCCTGA
Upstream 100 bases:
>100_bases GCGACTTTTGCTGCTGCCCGACGACGGCCTCGGAGGACTTCTTTGTGGACCGCGCCCGTTGCTTGGAGCAACGTGACCTG AACCCAGCTTGAGGCCCGCC
Downstream 100 bases:
>100_bases GCGGCGCGCCGGCGGGATTACGACGGGCGTGGGCCCGGCGGCCCCCACTCAGGCCGCCCCGCCCGCCTTCAGCAGCACCG CCAGGGCGGAGAGGATGTGG
Product: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Products: NA
Alternate protein names: Mannose-6-phosphate isomerase; Phosphohexomutase; Phosphomannose isomerase; PMI; Mannose-1-phosphate guanylyl transferase; GDP-mannose pyrophosphorylase; GMP; GMPP [H]
Number of amino acids: Translated: 483; Mature: 482
Protein sequence:
>483_residues MTTSSTVTSKSASGKIVPVILAGGSGTRLWPLSRNSLPKQFLPLATENTMFQDTLLRAAPGAVFADPVVVANEEFRFFAQ RQARAVGIDATVMLEPARRDSAPALIAAAVWVAETYGPETLVLALASDHVVLDPAGFVKTVEIGAEAARLGRIVTFGIEP TEPRTSYGYIRLGAQIDERGSYEVDSFVEKPDRATAERYVAAGYLWNSGNFLFPAGLLLKEADVFEPAIADAARAAVAEA KSDLGFLRLDPAAFKSSPSKSIDFAVLERTRHAAVVRGSFGWSDVGSWDALHEIGNQDERGNVTVGTVQLLDSSNSFVRS DGPLVTAIGLDGVSVIATEDAVLVMPSNRSQDVKALVSALKDSNRKEVEEHLTIHRPWGTYQTVCKGDRFQVKKIVVEPG GILSLQKHHHRAEHWVVVRGTAEVTVADRSYMVHENESTYIPIGSVHRLGNPGRIPLELIEVQTGSYLGEDDIHRFEDIY QRA
Sequences:
>Translated_483_residues MTTSSTVTSKSASGKIVPVILAGGSGTRLWPLSRNSLPKQFLPLATENTMFQDTLLRAAPGAVFADPVVVANEEFRFFAQ RQARAVGIDATVMLEPARRDSAPALIAAAVWVAETYGPETLVLALASDHVVLDPAGFVKTVEIGAEAARLGRIVTFGIEP TEPRTSYGYIRLGAQIDERGSYEVDSFVEKPDRATAERYVAAGYLWNSGNFLFPAGLLLKEADVFEPAIADAARAAVAEA KSDLGFLRLDPAAFKSSPSKSIDFAVLERTRHAAVVRGSFGWSDVGSWDALHEIGNQDERGNVTVGTVQLLDSSNSFVRS DGPLVTAIGLDGVSVIATEDAVLVMPSNRSQDVKALVSALKDSNRKEVEEHLTIHRPWGTYQTVCKGDRFQVKKIVVEPG GILSLQKHHHRAEHWVVVRGTAEVTVADRSYMVHENESTYIPIGSVHRLGNPGRIPLELIEVQTGSYLGEDDIHRFEDIY QRA >Mature_482_residues TTSSTVTSKSASGKIVPVILAGGSGTRLWPLSRNSLPKQFLPLATENTMFQDTLLRAAPGAVFADPVVVANEEFRFFAQR QARAVGIDATVMLEPARRDSAPALIAAAVWVAETYGPETLVLALASDHVVLDPAGFVKTVEIGAEAARLGRIVTFGIEPT EPRTSYGYIRLGAQIDERGSYEVDSFVEKPDRATAERYVAAGYLWNSGNFLFPAGLLLKEADVFEPAIADAARAAVAEAK SDLGFLRLDPAAFKSSPSKSIDFAVLERTRHAAVVRGSFGWSDVGSWDALHEIGNQDERGNVTVGTVQLLDSSNSFVRSD GPLVTAIGLDGVSVIATEDAVLVMPSNRSQDVKALVSALKDSNRKEVEEHLTIHRPWGTYQTVCKGDRFQVKKIVVEPGG ILSLQKHHHRAEHWVVVRGTAEVTVADRSYMVHENESTYIPIGSVHRLGNPGRIPLELIEVQTGSYLGEDDIHRFEDIYQ RA
Specific function: Involved in xanthan production [H]
COG id: COG0836
COG function: function code M; Mannose-1-phosphate guanylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788362, Length=478, Percent_Identity=48.1171548117155, Blast_Score=414, Evalue=1e-117,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR006375 - InterPro: IPR001538 - InterPro: IPR005835 - InterPro: IPR014710 [H]
Pfam domain/function: PF01050 MannoseP_isomer; PF00483 NTP_transferase [H]
EC number: =5.3.1.8; =2.7.7.13 [H]
Molecular weight: Translated: 52444; Mature: 52313
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSSTVTSKSASGKIVPVILAGGSGTRLWPLSRNSLPKQFLPLATENTMFQDTLLRAAP CCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHCC GAVFADPVVVANEEFRFFAQRQARAVGIDATVMLEPARRDSAPALIAAAVWVAETYGPET CCEEECCEEEECCHHHHHHHHCCCEECCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE LVLALASDHVVLDPAGFVKTVEIGAEAARLGRIVTFGIEPTEPRTSYGYIRLGAQIDERG EEEEEECCCEEECCCCCEEEEECCHHHHHCCEEEEECCCCCCCCCCCCEEEECCEECCCC SYEVDSFVEKPDRATAERYVAAGYLWNSGNFLFPAGLLLKEADVFEPAIADAARAAVAEA CCCHHHHHCCCCHHHHHHEEEEEEEECCCCEEECCHHHHHHCHHCCHHHHHHHHHHHHHH KSDLGFLRLDPAAFKSSPSKSIDFAVLERTRHAAVVRGSFGWSDVGSWDALHEIGNQDER HHCCCEEEECHHHHCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCC GNVTVGTVQLLDSSNSFVRSDGPLVTAIGLDGVSVIATEDAVLVMPSNRSQDVKALVSAL CCEEEEEEEEEECCCCEEECCCCEEEEECCCCEEEEEECCEEEEECCCCCHHHHHHHHHH KDSNRKEVEEHLTIHRPWGTYQTVCKGDRFQVKKIVVEPGGILSLQKHHHRAEHWVVVRG HCCCHHHHHHCCEEECCCCCHHHHHCCCCEEEEEEEECCCCEEEEHHHCCCCCEEEEEEC TAEVTVADRSYMVHENESTYIPIGSVHRLGNPGRIPLELIEVQTGSYLGEDDIHRFEDIY CEEEEEECCEEEEECCCCCEEECCHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH QRA HCC >Mature Secondary Structure TTSSTVTSKSASGKIVPVILAGGSGTRLWPLSRNSLPKQFLPLATENTMFQDTLLRAAP CCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHCC GAVFADPVVVANEEFRFFAQRQARAVGIDATVMLEPARRDSAPALIAAAVWVAETYGPET CCEEECCEEEECCHHHHHHHHCCCEECCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE LVLALASDHVVLDPAGFVKTVEIGAEAARLGRIVTFGIEPTEPRTSYGYIRLGAQIDERG EEEEEECCCEEECCCCCEEEEECCHHHHHCCEEEEECCCCCCCCCCCCEEEECCEECCCC SYEVDSFVEKPDRATAERYVAAGYLWNSGNFLFPAGLLLKEADVFEPAIADAARAAVAEA CCCHHHHHCCCCHHHHHHEEEEEEEECCCCEEECCHHHHHHCHHCCHHHHHHHHHHHHHH KSDLGFLRLDPAAFKSSPSKSIDFAVLERTRHAAVVRGSFGWSDVGSWDALHEIGNQDER HHCCCEEEECHHHHCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCC GNVTVGTVQLLDSSNSFVRSDGPLVTAIGLDGVSVIATEDAVLVMPSNRSQDVKALVSAL CCEEEEEEEEEECCCCEEECCCCEEEEECCCCEEEEEECCEEEEECCCCCHHHHHHHHHH KDSNRKEVEEHLTIHRPWGTYQTVCKGDRFQVKKIVVEPGGILSLQKHHHRAEHWVVVRG HCCCHHHHHHCCEEECCCCCHHHHHCCCCEEEEEEEECCCCEEEEHHHCCCCCEEEEEEC TAEVTVADRSYMVHENESTYIPIGSVHRLGNPGRIPLELIEVQTGSYLGEDDIHRFEDIY CEEEEEECCEEEEECCCCCEEECCHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH QRA HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1370280; 11589581 [H]