Click here to switch to the map view.

The map label for this gene is dnaQ [H]

Identifier: 154245775

GI number: 154245775

Start: 2057349

End: 2058071

Strand: Direct

Name: dnaQ [H]

Synonym: Xaut_1831

Alternate gene names: 154245775

Gene position: 2057349-2058071 (Clockwise)

Preceding gene: 154245774

Following gene: 154245777

Centisome position: 38.75

GC content: 64.87

Gene sequence:

>723_bases
ATGCGCGAGATCGTGCTCGACACCGAGACCACCGGCCTTGAAGCCTATGGCGGCGACCGCCTCGTGGAGATCGGCTGCGT
GGAGATGGTCAACCGCATTCTCACCGGCACGGTGTTCCACGTCTATATCAACCCCGAGCGCGACATGCCGGTGGAGGCGT
TCAACGTCCATGGCCTGTCAGCCGAATTCTTGTCCGACAAGCCGAAATTCAAGGACGTTGCCGACGAATTCCTGAATTTC
ATCGCCGAAGATACTTTGGTGATCCACAATGCGGCGTTCGATATCGGCTTCCTGAATGCGGAGCTGGAGCGCCTCGGCCG
CCCCACCATCGCCCGTGACCGGGTGGTGGACACCCTTGCGCTGGCGCGACGCAAGCATCCCGGCGGCGGCAACCGCCTCG
ACGATCTGATGAACCGCTACGGCATCGACAGCTCACGCCGCGTGAAGCACGGGGCGTTGCTGGATGCCGAGCTTCTGGCC
GAGGTCTATGGCGAGCTGCTCGGCGGCAAGCAGGCCAGCCTCATCGGCCTAGTGGAGGACACGAGCGAGGCGCCCCGTCT
TGTGGTCGCCGCAGCCGCGGCCCATCCCCGCCCCGTCCCACTCGCCCCGCGCCTGACTGCTGCCGAAGCGGAAGCCCATG
CGGCCTTCATCGCCAGCATGGGCGAGAAGGCGCTCTGGCTGAAATATGCCGACGTGCCCGAGGCGGATAAGACGGGCAGC
TGA

Upstream 100 bases:

>100_bases
CACCGGCCGGGGCTTTCCGGCGGCAGCCCATCAGGTGGCCGGCATCGTTCGGGCGCTGTCGGGTCCGGGGCGCCGGGCAG
CCTGCTGAGGGAGAAGACCC

Downstream 100 bases:

>100_bases
GTGGGCTGGAACTACTCGTTTTGCGGTTTTACAACTTTAAATCAACCAAAGGTTGATCGATTGGGAAGGCCGTGGACGGC
AAAATGGCCAACGGTTCGAT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPERDMPVEAFNVHGLSAEFLSDKPKFKDVADEFLNF
IAEDTLVIHNAAFDIGFLNAELERLGRPTIARDRVVDTLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLA
EVYGELLGGKQASLIGLVEDTSEAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPEADKTGS

Sequences:

>Translated_240_residues
MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPERDMPVEAFNVHGLSAEFLSDKPKFKDVADEFLNF
IAEDTLVIHNAAFDIGFLNAELERLGRPTIARDRVVDTLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLA
EVYGELLGGKQASLIGLVEDTSEAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPEADKTGS
>Mature_240_residues
MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPERDMPVEAFNVHGLSAEFLSDKPKFKDVADEFLNF
IAEDTLVIHNAAFDIGFLNAELERLGRPTIARDRVVDTLALARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLA
EVYGELLGGKQASLIGLVEDTSEAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPEADKTGS

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=240, Percent_Identity=45.8333333333333, Blast_Score=186, Evalue=9e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 26114; Mature: 26114

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPERDMPVEAFNVHGLS
CCEEEECCCCCCCEECCCCEEEEHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEEECCCC
AEFLSDKPKFKDVADEFLNFIAEDTLVIHNAAFDIGFLNAELERLGRPTIARDRVVDTLA
HHHHCCCCCHHHHHHHHHHHHHHCEEEEEECHHEEHHHHHHHHHCCCCCCHHHHHHHHHH
LARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELLGGKQASLIGLVED
HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
TSEAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPEADKTGS
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MREIVLDTETTGLEAYGGDRLVEIGCVEMVNRILTGTVFHVYINPERDMPVEAFNVHGLS
CCEEEECCCCCCCEECCCCEEEEHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEEECCCC
AEFLSDKPKFKDVADEFLNFIAEDTLVIHNAAFDIGFLNAELERLGRPTIARDRVVDTLA
HHHHCCCCCHHHHHHHHHHHHHHCEEEEEECHHEEHHHHHHHHHCCCCCCHHHHHHHHHH
LARRKHPGGGNRLDDLMNRYGIDSSRRVKHGALLDAELLAEVYGELLGGKQASLIGLVED
HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
TSEAPRLVVAAAAAHPRPVPLAPRLTAAEAEAHAAFIASMGEKALWLKYADVPEADKTGS
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]