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The map label for this gene is cycK [H]

Identifier: 154245601

GI number: 154245601

Start: 1875920

End: 1877905

Strand: Direct

Name: cycK [H]

Synonym: Xaut_1657

Alternate gene names: 154245601

Gene position: 1875920-1877905 (Clockwise)

Preceding gene: 154245600

Following gene: 154245602

Centisome position: 35.34

GC content: 70.49

Gene sequence:

>1986_bases
ATGATCGCGGAAATCGGCCAGTACGCCCTCGCCCTCGCCTTCGCCCTCTCGCTGGCGCAGGTGCTGCTGCCGTCCTGGGG
CGCGCGGCGCAACGACCCGGTGCTGATGGGCTCGGCCGGCCCCATCGCGCTGGCCCTGTTCGGCTTCATCTCCTTCGCCT
TCGGCGCTCTGGTGCAGCTCTATGTCACCTCGGACTTCACCGTGGTGAACGTGGCCGAGAATTCCCACTCCCAGATGCCG
CTGATCTACAAGATCACCTCGACCTGGGGGAACCACGAGGGCTCCATGCTCCTGTGGGTGTTCGTGCTGTCTTTCTTTGG
CGCGCTGGTGGTGCTGTTCGGCACCAACCTGCCGGATCGGCTGAAGGCGCTGGTGCTGGCGGTGCAGGGGGCGGTGGCGG
CGGCCTTCCTCTCGTTCATCCTGTTCACCTCCAACCCCTTCGCGCGCCTGGTGCCGGCGCCGGCGGAGGGGCGCGACCTC
AACCCCATCCTCCAGGACCCTGGCCTCGCCATCCACCCGCCGCTGCTCTATCTCGGCTATGTGGGGCTCTCCGTCTCCTT
CGCCTTCGCCATCGCGGCGCTGATCGAGGGGCGGATCGACGCGGCCTGGGCGCGCTGGGTGCGGCCGTGGACGCTCGCCG
CCTGGATCTTCCTGACGCTCGGCATCGCCATGGGCTCCTACTGGGCCTATTACGAACTGGGCTGGGGCGGCTGGTGGTTC
TGGGACCCGGTGGAGAACGCCTCCCTCATGCCGTGGCTCGCGGCAACCGCGCTGCTGCATTCCGCCGTGGTGATGGAGAA
GCGCGACGCCCTGAAGGTGTGGACCATCCTCCTCGCCATTCTCGCCTTTTCGCTCTCGCTGGTGGGCACCTTCCTGGTGC
GCTCGGGGGTGCTGACCTCGGTGCACGCCTTCGCCACCGATCCGGCGCGGGGCGTGTTCATCCTCGCCATCCTCACCTTC
TTCATCGCCGGCGGGCTGACCCTGTTCGCGTTCCGCGCCTCCGAGCTGAAGCAGGGCGGGCTGTTCGCGCCCATCTCGCG
GGAGGGGGCGCTGGTCCTCAACAATCTGTTCCTCACCGCCGCCACCGCCGCGGTGCTGGTGGGCACCCTCTACCCGCTGG
CGCTGGAAGCGCTGACCGGGGACAAGATCACGGTGGGGCCGCCCTACTTCAACCTCGCCTTCGGCGGGCTGATGGTGCCG
CTGGTGTTCGCCATGCCGTTCGGCCCGCTGCTGGCCTGGAAGCGCGGCGACCTCATGGGCGTCGCCCAGCGCCTGATGAT
GGCCGCCGCCCTTGCGGTGGTGGCCGCCGTGGTCATCGCCGCCGCCACCACGGGCGGGCCGGTGCTGGCGCCGCTGGTGG
TGGGGCTCGCGGTCTTCATCATGCTGGGGGCGCTCACCGACATCGCCGAGCGCGCGGGCCTCGGGCGGGTGACGGCGCGG
GTGGCGGTGGCGCGTCTCGCCGGGACGCCGCGCTCCGCTTATGGCACTGCCATCGCCCATTTCGGCGTCGGGGTGTGCCT
GCTCGGCATCGTGTGCGAGACCGGCTGGAGCCTGGAGAAGATCGCCTCCGTGAAGCTTGGCGACACCGTCACCATCGGTG
CCCGCAGCCTCACCCTCGACCGGCTGGAAAACCGCACCGGCGCCAACTTCCGCGCCCGCACGGCGGTGTTCTCCATCCGC
GAGGATGGCGAGTCGCAGGGCACCATCGAGGCCTCGCGCCGCATGTTCGCGGCCCGGCAGATGGCCACCACCGAGGCCGG
CATCCGCACCTTCGGCCTCAGCCAGCTCTATGTGAGCATGGGCGAGGAGAGCCCGGACGGGCACATCTCCATGCGCGCCA
CCTACAAGCCGTTCGTGACGCTGATCTGGCTCGGGGCGGTGGTGATGGCGCTGGGCGGCGCGCTCTCGCTGGCCGACCGG
CGCCTGCGCGTCGGCGCCCCCCGCCCCGCCACCAAGCGCCCCCGCGCCCCGGTGCCGGCGGAGTGA

Upstream 100 bases:

>100_bases
CGAGGTGGCCGACGCCCTGAAGAAGCAGGGCCGCTGGCAGGAAGGCGGCCCGGCTCCCGGCACCGCCGCGCCGGTCCAGC
GCGCGCCGGGGAGTTGAGCC

Downstream 100 bases:

>100_bases
TGGGCATGCGCCGCCTCCTCGCCGCCCTGCTCCTCCTCGCCAGCTTCGCGGCGCCTGCCCTCGCTGTGCAGCCGGACGAG
GTGCTGGCTGATCCGGTGCT

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 661; Mature: 661

Protein sequence:

>661_residues
MIAEIGQYALALAFALSLAQVLLPSWGARRNDPVLMGSAGPIALALFGFISFAFGALVQLYVTSDFTVVNVAENSHSQMP
LIYKITSTWGNHEGSMLLWVFVLSFFGALVVLFGTNLPDRLKALVLAVQGAVAAAFLSFILFTSNPFARLVPAPAEGRDL
NPILQDPGLAIHPPLLYLGYVGLSVSFAFAIAALIEGRIDAAWARWVRPWTLAAWIFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAATALLHSAVVMEKRDALKVWTILLAILAFSLSLVGTFLVRSGVLTSVHAFATDPARGVFILAILTF
FIAGGLTLFAFRASELKQGGLFAPISREGALVLNNLFLTAATAAVLVGTLYPLALEALTGDKITVGPPYFNLAFGGLMVP
LVFAMPFGPLLAWKRGDLMGVAQRLMMAAALAVVAAVVIAAATTGGPVLAPLVVGLAVFIMLGALTDIAERAGLGRVTAR
VAVARLAGTPRSAYGTAIAHFGVGVCLLGIVCETGWSLEKIASVKLGDTVTIGARSLTLDRLENRTGANFRARTAVFSIR
EDGESQGTIEASRRMFAARQMATTEAGIRTFGLSQLYVSMGEESPDGHISMRATYKPFVTLIWLGAVVMALGGALSLADR
RLRVGAPRPATKRPRAPVPAE

Sequences:

>Translated_661_residues
MIAEIGQYALALAFALSLAQVLLPSWGARRNDPVLMGSAGPIALALFGFISFAFGALVQLYVTSDFTVVNVAENSHSQMP
LIYKITSTWGNHEGSMLLWVFVLSFFGALVVLFGTNLPDRLKALVLAVQGAVAAAFLSFILFTSNPFARLVPAPAEGRDL
NPILQDPGLAIHPPLLYLGYVGLSVSFAFAIAALIEGRIDAAWARWVRPWTLAAWIFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAATALLHSAVVMEKRDALKVWTILLAILAFSLSLVGTFLVRSGVLTSVHAFATDPARGVFILAILTF
FIAGGLTLFAFRASELKQGGLFAPISREGALVLNNLFLTAATAAVLVGTLYPLALEALTGDKITVGPPYFNLAFGGLMVP
LVFAMPFGPLLAWKRGDLMGVAQRLMMAAALAVVAAVVIAAATTGGPVLAPLVVGLAVFIMLGALTDIAERAGLGRVTAR
VAVARLAGTPRSAYGTAIAHFGVGVCLLGIVCETGWSLEKIASVKLGDTVTIGARSLTLDRLENRTGANFRARTAVFSIR
EDGESQGTIEASRRMFAARQMATTEAGIRTFGLSQLYVSMGEESPDGHISMRATYKPFVTLIWLGAVVMALGGALSLADR
RLRVGAPRPATKRPRAPVPAE
>Mature_661_residues
MIAEIGQYALALAFALSLAQVLLPSWGARRNDPVLMGSAGPIALALFGFISFAFGALVQLYVTSDFTVVNVAENSHSQMP
LIYKITSTWGNHEGSMLLWVFVLSFFGALVVLFGTNLPDRLKALVLAVQGAVAAAFLSFILFTSNPFARLVPAPAEGRDL
NPILQDPGLAIHPPLLYLGYVGLSVSFAFAIAALIEGRIDAAWARWVRPWTLAAWIFLTLGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLAATALLHSAVVMEKRDALKVWTILLAILAFSLSLVGTFLVRSGVLTSVHAFATDPARGVFILAILTF
FIAGGLTLFAFRASELKQGGLFAPISREGALVLNNLFLTAATAAVLVGTLYPLALEALTGDKITVGPPYFNLAFGGLMVP
LVFAMPFGPLLAWKRGDLMGVAQRLMMAAALAVVAAVVIAAATTGGPVLAPLVVGLAVFIMLGALTDIAERAGLGRVTAR
VAVARLAGTPRSAYGTAIAHFGVGVCLLGIVCETGWSLEKIASVKLGDTVTIGARSLTLDRLENRTGANFRARTAVFSIR
EDGESQGTIEASRRMFAARQMATTEAGIRTFGLSQLYVSMGEESPDGHISMRATYKPFVTLIWLGAVVMALGGALSLADR
RLRVGAPRPATKRPRAPVPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=644, Percent_Identity=47.0496894409938, Blast_Score=528, Evalue=1e-151,
Organism=Escherichia coli, GI1790511, Length=582, Percent_Identity=35.9106529209622, Blast_Score=286, Evalue=4e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70344; Mature: 70344

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAEIGQYALALAFALSLAQVLLPSWGARRNDPVLMGSAGPIALALFGFISFAFGALVQL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
YVTSDFTVVNVAENSHSQMPLIYKITSTWGNHEGSMLLWVFVLSFFGALVVLFGTNLPDR
HEECCEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
LKALVLAVQGAVAAAFLSFILFTSNPFARLVPAPAEGRDLNPILQDPGLAIHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHCCCCCEECCHHHHHHH
VGLSVSFAFAIAALIEGRIDAAWARWVRPWTLAAWIFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASLMPWLAATALLHSAVVMEKRDALKVWTILLAILAFSLSLVGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFATDPARGVFILAILTFFIAGGLTLFAFRASELKQGGLFAPISREGALVLNNLFLTA
HHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH
ATAAVLVGTLYPLALEALTGDKITVGPPYFNLAFGGLMVPLVFAMPFGPLLAWKRGDLMG
HHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
VAQRLMMAAALAVVAAVVIAAATTGGPVLAPLVVGLAVFIMLGALTDIAERAGLGRVTAR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VAVARLAGTPRSAYGTAIAHFGVGVCLLGIVCETGWSLEKIASVKLGDTVTIGARSLTLD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEECCCEEEECCHHHHHH
RLENRTGANFRARTAVFSIREDGESQGTIEASRRMFAARQMATTEAGIRTFGLSQLYVSM
HHHCCCCCCCEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEESPDGHISMRATYKPFVTLIWLGAVVMALGGALSLADRRLRVGAPRPATKRPRAPVPA
CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
E
C
>Mature Secondary Structure
MIAEIGQYALALAFALSLAQVLLPSWGARRNDPVLMGSAGPIALALFGFISFAFGALVQL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
YVTSDFTVVNVAENSHSQMPLIYKITSTWGNHEGSMLLWVFVLSFFGALVVLFGTNLPDR
HEECCEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
LKALVLAVQGAVAAAFLSFILFTSNPFARLVPAPAEGRDLNPILQDPGLAIHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHCCCCCEECCHHHHHHH
VGLSVSFAFAIAALIEGRIDAAWARWVRPWTLAAWIFLTLGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE
WDPVENASLMPWLAATALLHSAVVMEKRDALKVWTILLAILAFSLSLVGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFATDPARGVFILAILTFFIAGGLTLFAFRASELKQGGLFAPISREGALVLNNLFLTA
HHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH
ATAAVLVGTLYPLALEALTGDKITVGPPYFNLAFGGLMVPLVFAMPFGPLLAWKRGDLMG
HHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
VAQRLMMAAALAVVAAVVIAAATTGGPVLAPLVVGLAVFIMLGALTDIAERAGLGRVTAR
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VAVARLAGTPRSAYGTAIAHFGVGVCLLGIVCETGWSLEKIASVKLGDTVTIGARSLTLD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEECCCEEEECCHHHHHH
RLENRTGANFRARTAVFSIREDGESQGTIEASRRMFAARQMATTEAGIRTFGLSQLYVSM
HHHCCCCCCCEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GEESPDGHISMRATYKPFVTLIWLGAVVMALGGALSLADRRLRVGAPRPATKRPRAPVPA
CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]