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The map label for this gene is ccmH [H]

Identifier: 154245602

GI number: 154245602

Start: 1877902

End: 1878390

Strand: Direct

Name: ccmH [H]

Synonym: Xaut_1658

Alternate gene names: 154245602

Gene position: 1877902-1878390 (Clockwise)

Preceding gene: 154245601

Following gene: 154245604

Centisome position: 35.37

GC content: 70.14

Gene sequence:

>489_bases
GTGATGGGCATGCGCCGCCTCCTCGCCGCCCTGCTCCTCCTCGCCAGCTTCGCGGCGCCTGCCCTCGCTGTGCAGCCGGA
CGAGGTGCTGGCTGATCCGGTGCTGGAAAGCCGGGCCCGCGCCATCTCGGCCGAATTACGCTGCATGGTCTGCCAGAACC
AGTCCATCGACGATTCCGATGCCCCGCTCGCCAAGGACCTGCGCCTCATCGTGCGCGAGCGGCTGAAGGCCGGGGACAGC
GACGGGCAGGTGATGGATTTCATGGTGGCGCGCTATGGCGAGTTCGTGCTGCTGCGGCCGGTCATGTCCTGGCGCAATGC
CCTGCTGTGGGCGGCGCCGGTGCTGGTGCTGGCCCTCGGTGCGCTCGCCGCGGTCTTCGGCCTGAAGCGCCGCCGCGCGG
TCGCCCCCCAGAGCCTCTCCGCCGACGAGGAAGCCCGCTTCAAAAAGCTTCTGGCGGAAGGGGAGGGGACGCTCCCCGAA
GGACGCTGA

Upstream 100 bases:

>100_bases
TGATGGCGCTGGGCGGCGCGCTCTCGCTGGCCGACCGGCGCCTGCGCGTCGGCGCCCCCCGCCCCGCCACCAAGCGCCCC
CGCGCCCCGGTGCCGGCGGA

Downstream 100 bases:

>100_bases
GCCCTTCGCCGCCTCAGCGCGCGTGGGGCCTGATCATGCCGAGCAGTGCATCCAAGGCCGCCTCCGGTGTGGCACGGGGC
CAGTCCGCCATCTGGTGGCG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MMGMRRLLAALLLLASFAAPALAVQPDEVLADPVLESRARAISAELRCMVCQNQSIDDSDAPLAKDLRLIVRERLKAGDS
DGQVMDFMVARYGEFVLLRPVMSWRNALLWAAPVLVLALGALAAVFGLKRRRAVAPQSLSADEEARFKKLLAEGEGTLPE
GR

Sequences:

>Translated_162_residues
MMGMRRLLAALLLLASFAAPALAVQPDEVLADPVLESRARAISAELRCMVCQNQSIDDSDAPLAKDLRLIVRERLKAGDS
DGQVMDFMVARYGEFVLLRPVMSWRNALLWAAPVLVLALGALAAVFGLKRRRAVAPQSLSADEEARFKKLLAEGEGTLPE
GR
>Mature_162_residues
MMGMRRLLAALLLLASFAAPALAVQPDEVLADPVLESRARAISAELRCMVCQNQSIDDSDAPLAKDLRLIVRERLKAGDS
DGQVMDFMVARYGEFVLLRPVMSWRNALLWAAPVLVLALGALAAVFGLKRRRAVAPQSLSADEEARFKKLLAEGEGTLPE
GR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=118, Percent_Identity=40.6779661016949, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17643; Mature: 17643

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGMRRLLAALLLLASFAAPALAVQPDEVLADPVLESRARAISAELRCMVCQNQSIDDSD
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
APLAKDLRLIVRERLKAGDSDGQVMDFMVARYGEFVLLRPVMSWRNALLWAAPVLVLALG
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAAVFGLKRRRAVAPQSLSADEEARFKKLLAEGEGTLPEGR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMGMRRLLAALLLLASFAAPALAVQPDEVLADPVLESRARAISAELRCMVCQNQSIDDSD
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
APLAKDLRLIVRERLKAGDSDGQVMDFMVARYGEFVLLRPVMSWRNALLWAAPVLVLALG
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAAVFGLKRRRAVAPQSLSADEEARFKKLLAEGEGTLPEGR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]