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The map label for this gene is sigK [H]

Identifier: 154245574

GI number: 154245574

Start: 1847236

End: 1847928

Strand: Direct

Name: sigK [H]

Synonym: Xaut_1629

Alternate gene names: 154245574

Gene position: 1847236-1847928 (Clockwise)

Preceding gene: 154245572

Following gene: 154245575

Centisome position: 34.79

GC content: 70.13

Gene sequence:

>693_bases
ATGGATGTCGCCGAGCCCAGCCTGTTTGCTCTCCCGCTCCCCCCGTCGCACCGGGCGGGTACGCCTGTCGGCGTCCGGCC
GCGCGGGCGGTTTGCGGTCCCGCCGGCCGGTTCGCCGGCCATGAGCGCCGTCCAACCCGAGCGCCGAGCGGGCGCTGACA
TGAGCGCTCTGGTCGTAGCCATCGCGCGCACCGGGGACCGTGAAGCCTTCGCACAGCTGTTCCGCCATTTCGCGCCCCGG
GTGAAGGCGTTCCTCATGCGCAGCGGCCTTTCCGCCAACGCGGCGGAGGAGCTGGCGCAAGAGACGCTGCTGATGGTGTG
GCGCAAGGCGTCCTATTTCGACCCGGCCCGCGCCGCCGCCTCCACCTGGATCTTCGCCATCGCCCGCAACCTCTCCATCG
ACCTGAAGCGCCGCGAGCGCCACATCAGCACGGTGGATGCGGACGCCGCCGACGAGGAGGCCGACGAGACCTCCGGCGAA
ACCATCCTCATGGGCGCCGAGCGCGATGCGCGGGTGCGGGCGGCCCTCGCCAAGCTCTCCGAGGAGCAGGCCACCATCGT
CCGGCTCTCCTTTTTCCAGGAGAAGCCCCATTCGCAGATCGCGCAGGAGCTGGGCATTCCGCTCGGCACCGCCAAATCGC
GCGTCCGCCTGGCGCTGAGCCGCCTGCGCACGCTGCTGGAAGATTTGAAATGA

Upstream 100 bases:

>100_bases
CGTTGGTGGAGCCGGTCCAAGCTCTCCACTAAGCTCGACGCACGCGCGGCGCATCGGGGGCTCGTATCATCCGATCGCGT
CCGGGCTTCGTATCGAGTGC

Downstream 100 bases:

>100_bases
GCGTCCATTCCCATCCCGGCGATGCGACCCTGCTGCGGTATGCGGCAGGCACGCTGCCGGCCGGGCCGGCCCTGCTGGTG
GAGATCCACCTTCAGGGTTG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MDVAEPSLFALPLPPSHRAGTPVGVRPRGRFAVPPAGSPAMSAVQPERRAGADMSALVVAIARTGDREAFAQLFRHFAPR
VKAFLMRSGLSANAAEELAQETLLMVWRKASYFDPARAAASTWIFAIARNLSIDLKRRERHISTVDADAADEEADETSGE
TILMGAERDARVRAALAKLSEEQATIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALSRLRTLLEDLK

Sequences:

>Translated_230_residues
MDVAEPSLFALPLPPSHRAGTPVGVRPRGRFAVPPAGSPAMSAVQPERRAGADMSALVVAIARTGDREAFAQLFRHFAPR
VKAFLMRSGLSANAAEELAQETLLMVWRKASYFDPARAAASTWIFAIARNLSIDLKRRERHISTVDADAADEEADETSGE
TILMGAERDARVRAALAKLSEEQATIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALSRLRTLLEDLK
>Mature_230_residues
MDVAEPSLFALPLPPSHRAGTPVGVRPRGRFAVPPAGSPAMSAVQPERRAGADMSALVVAIARTGDREAFAQLFRHFAPR
VKAFLMRSGLSANAAEELAQETLLMVWRKASYFDPARAAASTWIFAIARNLSIDLKRRERHISTVDADAADEEADETSGE
TILMGAERDARVRAALAKLSEEQATIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALSRLRTLLEDLK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 25094; Mature: 25094

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVAEPSLFALPLPPSHRAGTPVGVRPRGRFAVPPAGSPAMSAVQPERRAGADMSALVVA
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCHHHCCCCHHHHHHH
IARTGDREAFAQLFRHFAPRVKAFLMRSGLSANAAEELAQETLLMVWRKASYFDPARAAA
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
STWIFAIARNLSIDLKRRERHISTVDADAADEEADETSGETILMGAERDARVRAALAKLS
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHH
EEQATIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALSRLRTLLEDLK
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDVAEPSLFALPLPPSHRAGTPVGVRPRGRFAVPPAGSPAMSAVQPERRAGADMSALVVA
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCHHHCCCCHHHHHHH
IARTGDREAFAQLFRHFAPRVKAFLMRSGLSANAAEELAQETLLMVWRKASYFDPARAAA
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
STWIFAIARNLSIDLKRRERHISTVDADAADEEADETSGETILMGAERDARVRAALAKLS
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHH
EEQATIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALSRLRTLLEDLK
HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA