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The map label for this gene is nodB [H]

Identifier: 154245272

GI number: 154245272

Start: 1519415

End: 1520497

Strand: Reverse

Name: nodB [H]

Synonym: Xaut_1324

Alternate gene names: 154245272

Gene position: 1520497-1519415 (Counterclockwise)

Preceding gene: 154245282

Following gene: 154245271

Centisome position: 28.64

GC content: 69.71

Gene sequence:

>1083_bases
ATGTTTCCGCGCGCAACAGCTCGTGACCGGCCCGCACTGGCCAAGGGCCGCGCGGGCGCCTATGCGAAAGACCGATCCTT
CGCACCTGTCGAGTTTGCCGTGTCCGTCCGATCCACTCTTTGCCTCGCGCTCCTGCTGTTGCCTGCCTCCTTTCCGGTTC
TCGCCGGACCAGCGGCGGGGCCGGCCTGCTATTCGCCCGCGGCGCTGGCCGCGAAGCCGGGGGAGGAGATTGTGCGCCCG
CGTGCCGGCGGCCCGGTGACCCTGCCCGACATGGCGACGCCCACCCTGCCCCCGGTGCCGGCGGCGCTCCGCGGCTCGAT
CCGCCGGGTGGAGCTGCCGCCGGGAGAGAAGCTGGTCGCCCTCACCTTCGACCTGTGCGAGGCCTCGGCGGAGATTTCCG
GCTATGACGGTGCTCTGGTGGATTACCTGCGCGCCGAGAATGTCGCCGCCACCTTCTTCGCCGGCGGCAAATGGCTGATG
AGCCACACCGAGCGCGGCGACCAGCTCACCGCTGACCACCAGTTCGAGATGGGCAACCACACCTGGTCCCACGCCAACCT
CACCGTGCGCACGGGCGACGCCATGCGCCGGCAGGTGGACGACGCGGACGTGGCCCTCGCCCTGCGCCGCACTGAGGTGA
AGGCCAAGGGCTGCATGCTCCCGAGCGCACCGGCGCAGGCGACTGGCGGGGCGGAGCTGTTCCGCTTCCCTTACGGCTCA
TGCAGCGCCGAATCGCTGAATTATGTGAACGACACCGGCCACCTCGCCATCCAGTGGGATGTGGATTCGGGCGATCCCGC
CTTCATCGGCGCCAAGGGCATGGCCGAAGACATGCTGCGCTCCATCCGCCCCGGCTCCATCGTGCTCATGCACGCCAACG
GGCGCGGCAAGCATACCGCCGAGGCTCTGAGGATCCTGATCCCGGCGCTGCGGGCCAAGGGCTACCGTTTCGCCACCGTG
AGCCAGCTCCTGGCGGCGGGCCGTCCGGTGATCGCCGACACCTGCTATTCCCTGAAGCCCGGCGACACCCGCGTCTATGA
CGACGCCGCCCGCACCGGCAAGCGCATCCTGCCGGTGCAGTAG

Upstream 100 bases:

>100_bases
GGGGCCACCGCCTGATGGCCGGCGCCCGCAATCCGCCGGTTAGCCTGCCGCAGCGCCCTTCTCAAATGGAATCTGTTGAT
CGGCCCCCCTGCTCGCGCTG

Downstream 100 bases:

>100_bases
GGCCCCCGCCCCCATTGCGCGCACGCTGCCGCCTGCGCATGGTGGGCGCCCTTTGCGCCATGCCTCGAGTAACCCCATGA
CCCTCCTTTTCGCCCGCGAC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MFPRATARDRPALAKGRAGAYAKDRSFAPVEFAVSVRSTLCLALLLLPASFPVLAGPAAGPACYSPAALAAKPGEEIVRP
RAGGPVTLPDMATPTLPPVPAALRGSIRRVELPPGEKLVALTFDLCEASAEISGYDGALVDYLRAENVAATFFAGGKWLM
SHTERGDQLTADHQFEMGNHTWSHANLTVRTGDAMRRQVDDADVALALRRTEVKAKGCMLPSAPAQATGGAELFRFPYGS
CSAESLNYVNDTGHLAIQWDVDSGDPAFIGAKGMAEDMLRSIRPGSIVLMHANGRGKHTAEALRILIPALRAKGYRFATV
SQLLAAGRPVIADTCYSLKPGDTRVYDDAARTGKRILPVQ

Sequences:

>Translated_360_residues
MFPRATARDRPALAKGRAGAYAKDRSFAPVEFAVSVRSTLCLALLLLPASFPVLAGPAAGPACYSPAALAAKPGEEIVRP
RAGGPVTLPDMATPTLPPVPAALRGSIRRVELPPGEKLVALTFDLCEASAEISGYDGALVDYLRAENVAATFFAGGKWLM
SHTERGDQLTADHQFEMGNHTWSHANLTVRTGDAMRRQVDDADVALALRRTEVKAKGCMLPSAPAQATGGAELFRFPYGS
CSAESLNYVNDTGHLAIQWDVDSGDPAFIGAKGMAEDMLRSIRPGSIVLMHANGRGKHTAEALRILIPALRAKGYRFATV
SQLLAAGRPVIADTCYSLKPGDTRVYDDAARTGKRILPVQ
>Mature_360_residues
MFPRATARDRPALAKGRAGAYAKDRSFAPVEFAVSVRSTLCLALLLLPASFPVLAGPAAGPACYSPAALAAKPGEEIVRP
RAGGPVTLPDMATPTLPPVPAALRGSIRRVELPPGEKLVALTFDLCEASAEISGYDGALVDYLRAENVAATFFAGGKWLM
SHTERGDQLTADHQFEMGNHTWSHANLTVRTGDAMRRQVDDADVALALRRTEVKAKGCMLPSAPAQATGGAELFRFPYGS
CSAESLNYVNDTGHLAIQWDVDSGDPAFIGAKGMAEDMLRSIRPGSIVLMHANGRGKHTAEALRILIPALRAKGYRFATV
SQLLAAGRPVIADTCYSLKPGDTRVYDDAARTGKRILPVQ

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 38263; Mature: 38263

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPRATARDRPALAKGRAGAYAKDRSFAPVEFAVSVRSTLCLALLLLPASFPVLAGPAAG
CCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
PACYSPAALAAKPGEEIVRPRAGGPVTLPDMATPTLPPVPAALRGSIRRVELPPGEKLVA
CCCCCCCHHCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCHHHCCCCEEEECCCCCEEEE
LTFDLCEASAEISGYDGALVDYLRAENVAATFFAGGKWLMSHTERGDQLTADHQFEMGNH
EEEEHHHCCCCCCCCCCHHHHHHHHCCEEEEEEECCEEEEHHCCCCCCCCCCCEEECCCC
TWSHANLTVRTGDAMRRQVDDADVALALRRTEVKAKGCMLPSAPAQATGGAELFRFPYGS
EECCCEEEEECCHHHHHHCCCHHHEEEHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
CSAESLNYVNDTGHLAIQWDVDSGDPAFIGAKGMAEDMLRSIRPGSIVLMHANGRGKHTA
CCCCCCCEECCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCEEEEECCCCCCHHH
EALRILIPALRAKGYRFATVSQLLAAGRPVIADTCYSLKPGDTRVYDDAARTGKRILPVQ
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEECHHHHCCCEECCCC
>Mature Secondary Structure
MFPRATARDRPALAKGRAGAYAKDRSFAPVEFAVSVRSTLCLALLLLPASFPVLAGPAAG
CCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
PACYSPAALAAKPGEEIVRPRAGGPVTLPDMATPTLPPVPAALRGSIRRVELPPGEKLVA
CCCCCCCHHCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCHHHCCCCEEEECCCCCEEEE
LTFDLCEASAEISGYDGALVDYLRAENVAATFFAGGKWLMSHTERGDQLTADHQFEMGNH
EEEEHHHCCCCCCCCCCHHHHHHHHCCEEEEEEECCEEEEHHCCCCCCCCCCCEEECCCC
TWSHANLTVRTGDAMRRQVDDADVALALRRTEVKAKGCMLPSAPAQATGGAELFRFPYGS
EECCCEEEEECCHHHHHHCCCHHHEEEHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
CSAESLNYVNDTGHLAIQWDVDSGDPAFIGAKGMAEDMLRSIRPGSIVLMHANGRGKHTA
CCCCCCCEECCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCEEEEECCCCCCHHH
EALRILIPALRAKGYRFATVSQLLAAGRPVIADTCYSLKPGDTRVYDDAARTGKRILPVQ
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEECHHHHCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2615763 [H]