BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is ygfF [C]

Identifier: 154244966

GI number: 154244966

Start: 1166369

End: 1167109

Strand: Direct

Name: ygfF [C]

Synonym: Xaut_1016

Alternate gene names: 154244966

Gene position: 1166369-1167109 (Clockwise)

Preceding gene: 154244964

Following gene: 154244967

Centisome position: 21.97

GC content: 69.1

Gene sequence:

>741_bases
ATGACCTCTCACACCAGCAAGGTTGCGATCGTGACCGGAGCCGCGGGCGGCATCGGCGCGGCGGTGGCCGAGCGCCTCGC
GCGCGACGGCTTCACCGTGGTGGTGAACTACGCGGGCAAGACCGCGCCGGCCGACGCTCTGGTGGCGAAAATCGTGGCGG
CGGGCGGCCATGCCCTCACCGCCCAGGCCGATGTTTCCAATGCAGATTCCGTGCGTCGCATGTTCGACAGCGCGGAAACC
GCCTTCGGCGGCGTCGACGTGCTGATCAACACGGCCGGCATCATGGCCCTCGCGTCCATCGCCGACAGCGACGACGCGCT
GTTCGACCGCCACATTGCGGTCAACCTGAAGGGTACCTTCAACACCCTGCGCGAAGCGGCGCGGCGGCTGCGCGACGGTG
GGCGGATCGTGAACTTCTCGTCCAGCGTGGTCGGCCTGCTGCAGCCCACGTATGGCGTCTACGCTGCCACCAAGGCCGCC
GTCGAGGCCATGACCAGCATCCTCGCCAAGGAGTTGCGCGGCCGCAGCATCACGGTCAACGCCATCGCGCCGGGGCCCAC
GGCGACCAGGCTGTTTCTCGACGGCAAGCCGCAGGAGGTGGTGGATCGCCTCGCCAAGCTCGCACCGCTGGAGCGTCTCG
GCCAGCCCGAGGACATCGCCGCCGCCGTCGCCTTTCTGGTGGGGCCGGACGGTGCCTGGATCAACGGCCAGACCCTGCGG
GCCAACGGCGGTATCATCTGA

Upstream 100 bases:

>100_bases
ATAATGATGCCGGATCATGGGCGATTATCTGGCGTGGGGAAATGGGCATTGTCTCCACCAACCCGCCGCCACACCGGCGG
TCGGCACAGGAGCGAAGACC

Downstream 100 bases:

>100_bases
TCGCGGCGGTTGCCGCAGCTCAGAGGCCGCCTGTGCCCACGTCCCGGCGCGGCCGATTCCCATGCGATTCGACGCCAATA
TATAAATCATGTGAAGTTAT

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTSHTSKVAIVTGAAGGIGAAVAERLARDGFTVVVNYAGKTAPADALVAKIVAAGGHALTAQADVSNADSVRRMFDSAET
AFGGVDVLINTAGIMALASIADSDDALFDRHIAVNLKGTFNTLREAARRLRDGGRIVNFSSSVVGLLQPTYGVYAATKAA
VEAMTSILAKELRGRSITVNAIAPGPTATRLFLDGKPQEVVDRLAKLAPLERLGQPEDIAAAVAFLVGPDGAWINGQTLR
ANGGII

Sequences:

>Translated_246_residues
MTSHTSKVAIVTGAAGGIGAAVAERLARDGFTVVVNYAGKTAPADALVAKIVAAGGHALTAQADVSNADSVRRMFDSAET
AFGGVDVLINTAGIMALASIADSDDALFDRHIAVNLKGTFNTLREAARRLRDGGRIVNFSSSVVGLLQPTYGVYAATKAA
VEAMTSILAKELRGRSITVNAIAPGPTATRLFLDGKPQEVVDRLAKLAPLERLGQPEDIAAAVAFLVGPDGAWINGQTLR
ANGGII
>Mature_245_residues
TSHTSKVAIVTGAAGGIGAAVAERLARDGFTVVVNYAGKTAPADALVAKIVAAGGHALTAQADVSNADSVRRMFDSAETA
FGGVDVLINTAGIMALASIADSDDALFDRHIAVNLKGTFNTLREAARRLRDGGRIVNFSSSVVGLLQPTYGVYAATKAAV
EAMTSILAKELRGRSITVNAIAPGPTATRLFLDGKPQEVVDRLAKLAPLERLGQPEDIAAAVAFLVGPDGAWINGQTLRA
NGGII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=35.9683794466403, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.520325203252, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=34.412955465587, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI5031737, Length=240, Percent_Identity=30.8333333333333, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI10190704, Length=244, Percent_Identity=33.6065573770492, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=29.6, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=32.421875, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI109715829, Length=240, Percent_Identity=30.4166666666667, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=26.8199233716475, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4504505, Length=258, Percent_Identity=31.0077519379845, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=30.078125, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI33667109, Length=183, Percent_Identity=32.2404371584699, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI59889578, Length=206, Percent_Identity=30.5825242718447, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI40254986, Length=202, Percent_Identity=29.7029702970297, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4502601, Length=244, Percent_Identity=28.6885245901639, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=28.6885245901639, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=30.3867403314917, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=33.6065573770492, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=33.59375, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=32.9166666666667, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789378, Length=241, Percent_Identity=31.5352697095436, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789208, Length=256, Percent_Identity=30.46875, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=34.0163934426229, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=30.7377049180328, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=32.5, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=30.6122448979592, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=29.2181069958848, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=29.6875, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786701, Length=232, Percent_Identity=32.3275862068966, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787820, Length=231, Percent_Identity=26.8398268398268, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=27.6422764227642, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=25.8964143426295, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=33.739837398374, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=243, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=30.5882352941176, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=32, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=33.201581027668, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=29.5880149812734, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=29.9625468164794, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=29.5019157088123, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=31.4606741573034, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=29.8507462686567, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=30.5220883534137, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=30.2788844621514, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=29.3893129770992, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=28.3524904214559, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=28.030303030303, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=236, Percent_Identity=33.4745762711864, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=30.241935483871, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=28.6259541984733, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=27.6, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=32.2097378277154, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=202, Percent_Identity=33.1683168316832, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.2238805970149, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=28.4644194756554, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=268, Percent_Identity=28.3582089552239, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17558628, Length=191, Percent_Identity=32.4607329842932, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=30.5263157894737, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=27.2030651340996, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=28.2945736434109, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=26.5917602996255, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=239, Percent_Identity=29.7071129707113, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=212, Percent_Identity=30.188679245283, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=172, Percent_Identity=29.6511627906977, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=213, Percent_Identity=28.6384976525822, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=226, Percent_Identity=34.5132743362832, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=29.6747967479675, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=190, Percent_Identity=30, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=36.3636363636364, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=31.9838056680162, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=33.4645669291339, Blast_Score=103, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24643142, Length=240, Percent_Identity=32.5, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=34.251968503937, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=32.5490196078431, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24663911, Length=257, Percent_Identity=28.7937743190661, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=28.4, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=32.0158102766798, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI116007234, Length=241, Percent_Identity=30.7053941908714, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24648693, Length=248, Percent_Identity=32.258064516129, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI21355889, Length=248, Percent_Identity=32.258064516129, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI281364494, Length=260, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641232, Length=239, Percent_Identity=28.0334728033473, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007236, Length=255, Percent_Identity=29.0196078431373, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357673, Length=189, Percent_Identity=31.7460317460317, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571387, Length=257, Percent_Identity=30.7392996108949, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24644337, Length=175, Percent_Identity=33.7142857142857, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=30.8943089430894, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI116007232, Length=185, Percent_Identity=31.8918918918919, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24641388, Length=259, Percent_Identity=28.957528957529, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221331218, Length=203, Percent_Identity=32.0197044334975, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665247, Length=208, Percent_Identity=32.2115384615385, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331216, Length=206, Percent_Identity=32.5242718446602, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007238, Length=178, Percent_Identity=30.8988764044944, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI18859837, Length=239, Percent_Identity=29.7071129707113, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25278; Mature: 25147

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHTSKVAIVTGAAGGIGAAVAERLARDGFTVVVNYAGKTAPADALVAKIVAAGGHALT
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE
AQADVSNADSVRRMFDSAETAFGGVDVLINTAGIMALASIADSDDALFDRHIAVNLKGTF
EECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCHH
NTLREAARRLRDGGRIVNFSSSVVGLLQPTYGVYAATKAAVEAMTSILAKELRGRSITVN
HHHHHHHHHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AIAPGPTATRLFLDGKPQEVVDRLAKLAPLERLGQPEDIAAAVAFLVGPDGAWINGQTLR
EECCCCCEEEEEECCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHEECCCCCEECCEEEE
ANGGII
CCCCCC
>Mature Secondary Structure 
TSHTSKVAIVTGAAGGIGAAVAERLARDGFTVVVNYAGKTAPADALVAKIVAAGGHALT
CCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE
AQADVSNADSVRRMFDSAETAFGGVDVLINTAGIMALASIADSDDALFDRHIAVNLKGTF
EECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCHH
NTLREAARRLRDGGRIVNFSSSVVGLLQPTYGVYAATKAAVEAMTSILAKELRGRSITVN
HHHHHHHHHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
AIAPGPTATRLFLDGKPQEVVDRLAKLAPLERLGQPEDIAAAVAFLVGPDGAWINGQTLR
EECCCCCEEEEEECCCHHHHHHHHHHHCCHHHCCCCHHHHHHHHHEECCCCCEECCEEEE
ANGGII
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]