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The map label for this gene is yhjK [H]

Identifier: 229294895

GI number: 229294895

Start: 4583920

End: 4586106

Strand: Reverse

Name: yhjK [H]

Synonym: YpsIP31758_4069

Alternate gene names: 229294895

Gene position: 4586106-4583920 (Counterclockwise)

Preceding gene: 153950370

Following gene: 153950826

Centisome position: 97.1

GC content: 47.87

Gene sequence:

>2187_bases
ATGGCGTTCCTAATAGGAAAAGACCGAAACCCACATTATTCTTGCCTTCCATTAGAGTATCGCAAGATAAAATCGGCAAG
CGATCGAGTATACTCAGACAGAATCGACGAGTGGTTAGAGGATAGTAACAACCACCTTATTTTATGCAGTCGGAATTGGC
GGAGAACGAGTTTGCGGGTAAGGCGCTCATTAACGATTAAACAAATGGCAGCGGTGGCAGTAGTTGCACTGGTGACTATC
TGTATTTTTATCATCCTTCAGTTGTTCCACTTTGTGCAACAGCGTAAAGATGATTATGCCAACCAGTTGGAAAGTATTGC
TTATTCGGTTCGCCAACCCCTGTCTGAGGCCATACTCAGCGTTGATATTCCACAAGCTAAAAAAATCCTCAACAGCCTAT
TACCTATTGGTATTCTTAGCCGTGCTGAAGTGATATTACCGAACCAAATACAGGTATTGCACGCAAATTTTCCAACAGAG
CGGCCCATTCCACACTGGGCCAAGCGGGTTTTCTCCTTGCCCGTACAGATAACCGTGCCTTTATATGCGTTGGAACGGGT
ACCCGCAAACCCTCAGCCCTTAGCGCATTTAGTCCTGCGTGCTGACTCTTTCCGTATGTATCAATTTATTCTCAGCGCTC
TGTCAGCCATGCTCTCAACATATTTGTTACTGGCATTGGTGTTATCGGTATCTATCGCTTGGTGTATTAATCGCCTGATT
ATTCACCCGCTGCGGGCAATGGCCAAAGAGCTGGAGGATATTGGTGACCACGGGGTGCTGCATCATCAACTGACGCTACC
GGCGCATCATCAGGATGATGAACTGGGTGTGTTGGTGCGTAATTACAACCGCAATCAGCAACTGTTAGCGGATGCCTATG
CTGATATGGGCCGCATTAGTCACCGTTTCCCGGTGACTGAATTGCCCAATCGGTCATTATTTATCAGCCTGCTGGAGAAA
GAAATTGCCTCCAGTACGCGTACAGATCACTTTCATCTGTTGGTGATTGGTATTGAAACCCTGCAAGAGGTTTCTGGCGC
CATGAGTGAAGCCCAGCACCAACAGTTATTGTTGACGATAGTACAGCGGATCGAGCAGTGCATTGATGACAGCGACCTGT
TAGCGCAACTGAGTAAAACTGAATTTGCCGTGTTAGCCAGAGGTACCCGCCGCTCATTCCCAGCCATGCAATTGGCTCGG
CGGATTATGTCGCAAGTGACCCAACCGCTGTTTTTCGACGAGATAACATTGCGCCCCAGTGCCAGTATTGGTATCACCCG
CTATCAGGCTCAACAGGACACTGCCGAATCCATGATGCGCAATGCCAGTACAGCAATGATGGCGGCTCATCATGAGGGGC
GTAATCAGATAATGGTATTTGAGCCTCATTTGATTGAAAAAACGCACAAGCGGCTGACGCAGGAAAATGACCTCTTACAG
GCGATTGAAAACCACGATTTCACGTTATTCTTACAACCTCAATGGGATATGAAGCGCCAGCAGGTTATCGGTGCGGAGGC
GCTACTGCGTTGGTGCCAACCAGATGGCAGCTACGTTTTACCGTCAGGCTTTGTTCACTTCGCCGAAGAGGAGGGGATGA
TGGTGCCACTGGGGAACTGGGTGCTAGAAGAAGCCTGCCGTATTCTGGCTGATTGGAAAGCACGCGGTGTTAGCCTGCCG
TTATCGGTGAATATATCGGGCTTACAGGTACAAAATAAACAGTTCTTGCCGCATTTGAAAACGCTCATTAGCCACTATCA
TATTGATCCACAACAATTGTTACTGGAAATCACCGAAACTGCCCAAATTCAGGATCTCGATGAAGCATTGAGGCTACTGC
GTGAGTTACAGGGGCTGGGGTTATTGATCGCGTTAGATGATTTTGGTATTGGCTACTCAAGCTTACGGTATCTTAACCAC
CTGAAAAGCTTGCCTATCCATATGATTAAGTTGGATAAGAGCTTTGTGAAAAATTTGCCAGAGGATGACGCGATAGCGCG
CATTATTAGCTGTGTTTCTGATGTACTAAAGGTACGTGTGATGGCCGAAGGGGTCGAAACAGAAGAGCAGCGCCAATGGT
TGCTAGAGCATGGCATTCAATGCGGCCAAGGCTTCCTTTTCTCTCCGCCACTGCCACGTGCAGAATTTGAAGCCCAGTAT
TTCAGCAGCGCTCACCACGTAAGTTAA

Upstream 100 bases:

>100_bases
CTTAAGGGATCACAACTTACTCGATGGGGACTAAAAAGGGGCGTCTAAACACCAAGCACTTGAACACCAAACGTCTGAAC
ACCAAAAACAGTACTGCGAA

Downstream 100 bases:

>100_bases
CTCTTTGTATGGCGGTGTCCACCAGCAGTACTTAACACGCCGAGAATCTGCAGTGAATGACCGCCTACCCACCGTCAATT
CTGACGACAGCCGATGACGC

Product: biofilm formation regulator HmsP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 727

Protein sequence:

>728_residues
MAFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRVRRSLTIKQMAAVAVVALVTI
CIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILSVDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTE
RPIPHWAKRVFSLPVQITVPLYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEK
EIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLAR
RIMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGVSLP
LSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNH
LKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY
FSSAHHVS

Sequences:

>Translated_728_residues
MAFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRVRRSLTIKQMAAVAVVALVTI
CIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILSVDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTE
RPIPHWAKRVFSLPVQITVPLYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEK
EIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLAR
RIMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGVSLP
LSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNH
LKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY
FSSAHHVS
>Mature_727_residues
AFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRVRRSLTIKQMAAVAVVALVTIC
IFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILSVDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTER
PIPHWAKRVFSLPVQITVPLYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLII
HPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEKE
IASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARR
IMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA
IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGVSLPL
SVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHL
KSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQYF
SSAHHVS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HAMP domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=664, Percent_Identity=48.4939759036145, Blast_Score=628, Evalue=0.0,
Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=32.2274881516588, Blast_Score=225, Evalue=7e-60,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=31.6546762589928, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=34.5238095238095, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=35.4838709677419, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=34.6613545816733, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=33.3333333333333, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=31.6, Blast_Score=126, Evalue=6e-30,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=30.6772908366534, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1788849, Length=428, Percent_Identity=25.7009345794392, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=299, Percent_Identity=27.4247491638796, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=28.6307053941909, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=32.520325203252, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00672 HAMP [H]

EC number: NA

Molecular weight: Translated: 82965; Mature: 82834

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRV
CEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
RRSLTIKQMAAVAVVALVTICIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTERPIPHWAKRVFSLPVQITVP
CCCHHHHHHHHHHCCHHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEH
LYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRIS
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
HRFPVTELPNRSLFISLLEKEIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
VQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPS
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCEEECCC
ASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNW
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCEEECHHH
VLEEACRILADWKARGVSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITET
HHHHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLP
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHEEEECHHHHHCCC
EDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCCCCCCCHHHHHHH
FSSAHHVS
HCCCCCCC
>Mature Secondary Structure 
AFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRV
EEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
RRSLTIKQMAAVAVVALVTICIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTERPIPHWAKRVFSLPVQITVP
CCCHHHHHHHHHHCCHHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEH
LYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRIS
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
HRFPVTELPNRSLFISLLEKEIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
VQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPS
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCEEECCC
ASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNW
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCEEECHHH
VLEEACRILADWKARGVSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITET
HHHHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLP
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHEEEECHHHHHCCC
EDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCCCCCCCCCCCHHHHHHH
FSSAHHVS
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 10493123 [H]