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The map label for this gene is kdgM1 [H]

Identifier: 153950826

GI number: 153950826

Start: 4582575

End: 4583279

Strand: Reverse

Name: kdgM1 [H]

Synonym: YpsIP31758_4068

Alternate gene names: 153950826

Gene position: 4583279-4582575 (Counterclockwise)

Preceding gene: 229294895

Following gene: 153949939

Centisome position: 97.04

GC content: 39.15

Gene sequence:

>705_bases
ATGAATATTAAATTATTGTCTCTGGCAGTGGCATCACTCATTAGTACCAGCGCAGTGGCAGTCACTATTGACTATCGTCA
TGAAATGCAAGATCAAAGTGGTAACACTCACAAAGATAGGTTATTAATGTCCCACCGCTTTGCTAATGGCTTTGGATTAT
CTTTGGAAGGCAAGTGGAAAGGCGCTCAGGATAAGGATAAACCCTTCAATGAAACCGTCAGTAATGGCACTGAAGTTGTT
GCCAGCTATGTGTATAAAATTAATAACACATTCTCTATTGAGCCGGGATTCTCATTAGATTCAAACTCTACGTCTAACAA
TTATCGCCCTTATCTGCGTGGCAAGGCAGTTATCGTTGATGATCTCTCCGTTTCATTGCGTTATCGCCCTTATTATAAAC
GTACCAGTGCGAATATTAATACGCCAAAAGACACCTCTGAAAATGGCTATAACCTGACGAGTGTCATTAGTTATAAAATT
GCTAAAGATTATCAATTAGATTATGAAATCGATTACAAACAGGCAAATAAAGCCGGTGTTGTGTTAGCTGATAAAGAAAA
CTACGATTGGAGCCACGATCTTAAATTAACGTACAAGTGGGATAAGAATTGGTCTCCTTATATGGCACTCGGTAATGTTT
CTGGTAGCAAAAATACCGATGAGCGCCAAACACGTTATCGCGTAGGGGTAAAATATAGCTTCTAA

Upstream 100 bases:

>100_bases
GATCTCGGAACTTTATATCAAAATAAATAAAATACTGTTTCATAACTGCTTTTGTACTTATCAAAATAATGAGAATTTTT
ATTAAAATAAGGTAACTAGA

Downstream 100 bases:

>100_bases
TTTATATCTAGACCCAAAATAATTTGAGTTGCAGGAAGGCTGCTTGCTGCGGCCTCGAAGAGGCGAGGCCCCTTGATGGG
CCGAGTCACGAGCGCAGCCA

Product: oligogalacturonate-specific porin protein KdgM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNIKLLSLAVASLISTSAVAVTIDYRHEMQDQSGNTHKDRLLMSHRFANGFGLSLEGKWKGAQDKDKPFNETVSNGTEVV
ASYVYKINNTFSIEPGFSLDSNSTSNNYRPYLRGKAVIVDDLSVSLRYRPYYKRTSANINTPKDTSENGYNLTSVISYKI
AKDYQLDYEIDYKQANKAGVVLADKENYDWSHDLKLTYKWDKNWSPYMALGNVSGSKNTDERQTRYRVGVKYSF

Sequences:

>Translated_234_residues
MNIKLLSLAVASLISTSAVAVTIDYRHEMQDQSGNTHKDRLLMSHRFANGFGLSLEGKWKGAQDKDKPFNETVSNGTEVV
ASYVYKINNTFSIEPGFSLDSNSTSNNYRPYLRGKAVIVDDLSVSLRYRPYYKRTSANINTPKDTSENGYNLTSVISYKI
AKDYQLDYEIDYKQANKAGVVLADKENYDWSHDLKLTYKWDKNWSPYMALGNVSGSKNTDERQTRYRVGVKYSF
>Mature_234_residues
MNIKLLSLAVASLISTSAVAVTIDYRHEMQDQSGNTHKDRLLMSHRFANGFGLSLEGKWKGAQDKDKPFNETVSNGTEVV
ASYVYKINNTFSIEPGFSLDSNSTSNNYRPYLRGKAVIVDDLSVSLRYRPYYKRTSANINTPKDTSENGYNLTSVISYKI
AKDYQLDYEIDYKQANKAGVVLADKENYDWSHDLKLTYKWDKNWSPYMALGNVSGSKNTDERQTRYRVGVKYSF

Specific function: Porin specific for oligogalacturonides. Also required for full virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009331
- InterPro:   IPR003192 [H]

Pfam domain/function: PF06178 KdgM [H]

EC number: NA

Molecular weight: Translated: 26660; Mature: 26660

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKLLSLAVASLISTSAVAVTIDYRHEMQDQSGNTHKDRLLMSHRFANGFGLSLEGKWK
CCEEHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
GAQDKDKPFNETVSNGTEVVASYVYKINNTFSIEPGFSLDSNSTSNNYRPYLRGKAVIVD
CCCCCCCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEECCCEEEEE
DLSVSLRYRPYYKRTSANINTPKDTSENGYNLTSVISYKIAKDYQLDYEIDYKQANKAGV
CCEEEEEECCCEEECCCCCCCCCCCCCCCCEEEHEEEEEEECCEEEEEEECCCCCCCCEE
VLADKENYDWSHDLKLTYKWDKNWSPYMALGNVSGSKNTDERQTRYRVGVKYSF
EEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCHHHEEEEEEEECC
>Mature Secondary Structure
MNIKLLSLAVASLISTSAVAVTIDYRHEMQDQSGNTHKDRLLMSHRFANGFGLSLEGKWK
CCEEHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
GAQDKDKPFNETVSNGTEVVASYVYKINNTFSIEPGFSLDSNSTSNNYRPYLRGKAVIVD
CCCCCCCCCHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEECCCEEEEE
DLSVSLRYRPYYKRTSANINTPKDTSENGYNLTSVISYKIAKDYQLDYEIDYKQANKAGV
CCEEEEEECCCEEECCCCCCCCCCCCCCCCEEEHEEEEEEECCEEEEEEECCCCCCCCEE
VLADKENYDWSHDLKLTYKWDKNWSPYMALGNVSGSKNTDERQTRYRVGVKYSF
EEECCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11773048 [H]