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The map label for this gene is ddpB [H]

Identifier: 153949959

GI number: 153949959

Start: 4013915

End: 4014964

Strand: Direct

Name: ddpB [H]

Synonym: YpsIP31758_3552

Alternate gene names: 153949959

Gene position: 4013915-4014964 (Clockwise)

Preceding gene: 153949524

Following gene: 153950409

Centisome position: 84.98

GC content: 53.05

Gene sequence:

>1050_bases
ATGTCTGTAGCATTAAATACCACGCCGGGAACCCCCTCCCGGCGTCATCTTTTGGTTTTTTTACAGGGGCTATTCACCCT
GGCCCTAACGCTATTCGGCCTGTTGGTGATCACTTTCTTCCTTTCGGCACTGTCGCCAGTGGACCGAGTCCTGCAAATTG
TGGGCGATCACGCCAGTGAAGCCACTTACCAACAGGTCAAACAGCAACTCGGGTTGGACCAGCCATTATTTGTACAATTC
TGGCACTATCTGGTGCGATTGGCTCATGGAGATTTAGGGGTCGCCAGCGCCAGTGGCCAGCCGGTATTACAGGATCTACT
GACCGTCTTCCCTGCCTCGTTAGAATTGGCAACCTTATCACTGCTCGTGGGCGGTGCACTGGGTATTTTCCTCGGTTTAT
TGTGCGCCCGCTGGGCAGGTAGCAAGCTGGATATCACTATCCGCTTTATCACTCTGCTGGGTAATTCAGTGCCCATTTTC
TGGCTCGGCTTGCTGATGCTGCTGCTGTTTTATGCGCGGTTGCAATGGAGCCCCGGTCCGGGTCGTCTGGATGATATCTA
CCAATATACTGTTGAAGCCAAGACCGGTTTTGTGCTGATCGATACCTGGCGATCAGGTGATATGGGGGCCTTTAATAATG
CTCTCGGCCACATGATTTTGCCGGTCTCCCTACTGGCTTACTATGCGTTAGCCAGTATCACCCGCCTGACCCGCTCGGCC
TGCCTAAGTGAATTGAATAAAGAGTACATCACGCTGGCAAGGGCCAAGGGCGCAGGTGAAATGCGTATTTTACTGATGCA
CGTCCTGCCCAATATTCGTGGCACCTTACTGACGGTCATTGCGCTGGCCTATACCAGTATGTTGGAAGGTGCGGTGTTAA
CCGAAACTGTTTTTGCCTGGCCAGGCATTGGTCGCTACCTGACCAGCGCCCTATTTGCCGGGGACACCACGGCGATTATG
GGCGGAACCTTGCTGCTCGGTATGTGCTTTATTTTGATTAACAATGTGACGGATCTGCTCGTCCGCCTGCTAGATCCGAG
AACGCGCTGA

Upstream 100 bases:

>100_bases
AATAAGACCCTTGTGCTGACTTATTTGTGAAATGAGTTAGATGTGATATTAGTTATTTGTGGAACACATGTAACTCAAGC
GACAAGCGAGCCGATAGTCA

Downstream 100 bases:

>100_bases
TATGTCGATGATGCTGATATGCCAATAATAAAGTTCTACCGCACGCTGAAGCGTTCCCCGTCCACCAGCATAGGTCTGTT
TATTCTATCACTGCTGGTTA

Product: dipeptide/oligopeptide/nickel ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSVALNTTPGTPSRRHLLVFLQGLFTLALTLFGLLVITFFLSALSPVDRVLQIVGDHASEATYQQVKQQLGLDQPLFVQF
WHYLVRLAHGDLGVASASGQPVLQDLLTVFPASLELATLSLLVGGALGIFLGLLCARWAGSKLDITIRFITLLGNSVPIF
WLGLLMLLLFYARLQWSPGPGRLDDIYQYTVEAKTGFVLIDTWRSGDMGAFNNALGHMILPVSLLAYYALASITRLTRSA
CLSELNKEYITLARAKGAGEMRILLMHVLPNIRGTLLTVIALAYTSMLEGAVLTETVFAWPGIGRYLTSALFAGDTTAIM
GGTLLLGMCFILINNVTDLLVRLLDPRTR

Sequences:

>Translated_349_residues
MSVALNTTPGTPSRRHLLVFLQGLFTLALTLFGLLVITFFLSALSPVDRVLQIVGDHASEATYQQVKQQLGLDQPLFVQF
WHYLVRLAHGDLGVASASGQPVLQDLLTVFPASLELATLSLLVGGALGIFLGLLCARWAGSKLDITIRFITLLGNSVPIF
WLGLLMLLLFYARLQWSPGPGRLDDIYQYTVEAKTGFVLIDTWRSGDMGAFNNALGHMILPVSLLAYYALASITRLTRSA
CLSELNKEYITLARAKGAGEMRILLMHVLPNIRGTLLTVIALAYTSMLEGAVLTETVFAWPGIGRYLTSALFAGDTTAIM
GGTLLLGMCFILINNVTDLLVRLLDPRTR
>Mature_348_residues
SVALNTTPGTPSRRHLLVFLQGLFTLALTLFGLLVITFFLSALSPVDRVLQIVGDHASEATYQQVKQQLGLDQPLFVQFW
HYLVRLAHGDLGVASASGQPVLQDLLTVFPASLELATLSLLVGGALGIFLGLLCARWAGSKLDITIRFITLLGNSVPIFW
LGLLMLLLFYARLQWSPGPGRLDDIYQYTVEAKTGFVLIDTWRSGDMGAFNNALGHMILPVSLLAYYALASITRLTRSAC
LSELNKEYITLARAKGAGEMRILLMHVLPNIRGTLLTVIALAYTSMLEGAVLTETVFAWPGIGRYLTSALFAGDTTAIMG
GTLLLGMCFILINNVTDLLVRLLDPRTR

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=45.0920245398773, Blast_Score=230, Evalue=9e-62,
Organism=Escherichia coli, GI1789965, Length=322, Percent_Identity=39.1304347826087, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=36.7041198501873, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1789888, Length=283, Percent_Identity=33.9222614840989, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1787053, Length=329, Percent_Identity=31.9148936170213, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=28.5714285714286, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1788504, Length=292, Percent_Identity=27.3972602739726, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38086; Mature: 37954

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVALNTTPGTPSRRHLLVFLQGLFTLALTLFGLLVITFFLSALSPVDRVLQIVGDHASE
CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ATYQQVKQQLGLDQPLFVQFWHYLVRLAHGDLGVASASGQPVLQDLLTVFPASLELATLS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
LLVGGALGIFLGLLCARWAGSKLDITIRFITLLGNSVPIFWLGLLMLLLFYARLQWSPGP
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
GRLDDIYQYTVEAKTGFVLIDTWRSGDMGAFNNALGHMILPVSLLAYYALASITRLTRSA
CCHHHHHHHHEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLSELNKEYITLARAKGAGEMRILLMHVLPNIRGTLLTVIALAYTSMLEGAVLTETVFAW
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC
PGIGRYLTSALFAGDTTAIMGGTLLLGMCFILINNVTDLLVRLLDPRTR
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVALNTTPGTPSRRHLLVFLQGLFTLALTLFGLLVITFFLSALSPVDRVLQIVGDHASE
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ATYQQVKQQLGLDQPLFVQFWHYLVRLAHGDLGVASASGQPVLQDLLTVFPASLELATLS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
LLVGGALGIFLGLLCARWAGSKLDITIRFITLLGNSVPIFWLGLLMLLLFYARLQWSPGP
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
GRLDDIYQYTVEAKTGFVLIDTWRSGDMGAFNNALGHMILPVSLLAYYALASITRLTRSA
CCHHHHHHHHEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLSELNKEYITLARAKGAGEMRILLMHVLPNIRGTLLTVIALAYTSMLEGAVLTETVFAW
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHC
PGIGRYLTSALFAGDTTAIMGGTLLLGMCFILINNVTDLLVRLLDPRTR
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]