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The map label for this gene is ddpA [H]

Identifier: 153949524

GI number: 153949524

Start: 4012251

End: 4013819

Strand: Direct

Name: ddpA [H]

Synonym: YpsIP31758_3551

Alternate gene names: 153949524

Gene position: 4012251-4013819 (Clockwise)

Preceding gene: 153947545

Following gene: 153949959

Centisome position: 84.95

GC content: 48.82

Gene sequence:

>1569_bases
ATGAAAGCAAAAGTTCTGTCATTATTCGTTCTGGCAGCGTTATCTGGCGGCACATTGGCAGCAACGCCGCCGGATACGCT
GATAGTCGTGCAATCCCTGGATGACATCGTCAGCCTTGACCCCGCAGAAAGTAACGAGCTGTCTAGCATTCAGACAGTAC
CGAGCCTCTATCAGCGCTTAGTTCAAGCCGACCGCGATAACCCGGCAAAAGTAGTACCCGTCCTGGCCGAAAGCTGGGAA
GGCGATGCCGCAGCCAAAACATTAACGGTCAAATTGCGTCCACAGGCGGTATTTGCATCGGGTAATCCGGTACAAGCCGA
TGACGTCATTTATTCTTTCACCCGCGCAGTGAAAATGAATCGCTCACCTGCTTTTATTCTCAACGTCTTGGGCTGGCAGG
CTGATAACATCGATCAACACCTAAAGAAAATTGATAATAATACCGTGCAAGTAAGCTGGAGTGCAGATGTCAGCCCAGCG
GTTGCCTTGAATATTTTATCAACGCCCATTGCATCCATTGTTGATAAAAAAACCGTGACGGCGAATACCAAAGATGACGA
TTACGGTAATGCGTGGCTCAAAATGCACTCTGCCGGTAGCGGCGCCTTCAAAATGCGGGTTTATCAGCCGCACCAAGCCA
TTGTGCTGGATGCCAACCCTACGTCACCGGGTAATCAGCCATTAATTAAGAATATTATTATTAAAAACGTGCCTGACCCC
AGTGCCCGCCGCCTGTTAATTCAACAAGGTGATGCTGATATTGCACGGGAATTAGGGCCGGACCAAATTACTGCGCTGAA
AACACAGGCCGGCGTCAAGGTCGTTGAAATCCCATCAGCAGAACAAAACTATTTGGTGTTTAACACCGCTAATGCCGCTA
ACCCGCTGCTGAGCAGGCCAGAACTCTGGCAAGCAGCCCGTTATCTGGTGGATTACCAAGGTATTACCAAAGATCTGTTG
AAAGATCAGTATTTCATTCATCAAAGCTTCCTCCCCGTTGGTTTGCCTGGGGCATTGGCAAGCAATCCATTCACTTTTGA
TCCGGCCACCGCCAAAAAAATTCTGGCTAAAGCGGGCATTAAAGATGCCACACTGACACTGGATGTTGAGAACAAACCCC
CGTTTATCACCATTGCTCAGTCGTTACAGGCCAGCTTTGCGCAGGGGGGGGTGAAACTGGTATTGCTGCCAGCAGCAGGT
AGCCAAGTTTATGGTCGGGTGCGGGCTAAACAGCATCAATCGGCGATTCGCCTGTGGATCCCGGATTATTTCGATGCACA
CTCCAATGCCAGCACCTTCGCTTATAACGACGGTAAAAGCAGTACGGTGGCGGGCCTAAACGGCTGGGTTATTCCTGAAC
TGAATAAGCAAACACTGGCTGCCGTCGCTGAAGCAGATCCAGAAAAACGGACTCAGTTGTACACCCAGTTACAGCAGGAA
CTGCAGCAAAACTCGCCTTATATCTTTATTGATCAAGCCAAAGCACAAGTTGTGTTACGAGATAATGTAAAAGGCTATCA
ACAAGGTCTGAATGCCGATATGGTCTATTATGATCGTGTCAGTAAATAA

Upstream 100 bases:

>100_bases
AGCTGCGGTGAAATAAATAAAAAAACACTCATTTTCTATCGATGTTAACTACTTAATACTAGAAACACGCGATGGCGGTA
ATCTATTCTTGGGAGTCTCA

Downstream 100 bases:

>100_bases
GACCCTTGTGCTGACTTATTTGTGAAATGAGTTAGATGTGATATTAGTTATTTGTGGAACACATGTAACTCAAGCGACAA
GCGAGCCGATAGTCAATGTC

Product: dipeptide/oligopeptide/nickel ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLAESWE
GDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPA
VALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGITKDLL
KDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLPAAG
SQVYGRVRAKQHQSAIRLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQLQQE
LQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK

Sequences:

>Translated_522_residues
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLAESWE
GDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPA
VALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGITKDLL
KDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLPAAG
SQVYGRVRAKQHQSAIRLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQLQQE
LQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK
>Mature_522_residues
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLAESWE
GDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPA
VALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGITKDLL
KDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLPAAG
SQVYGRVRAKQHQSAIRLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQLQQE
LQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=499, Percent_Identity=31.4629258517034, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI1789966, Length=475, Percent_Identity=25.4736842105263, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787052, Length=498, Percent_Identity=24.6987951807229, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787551, Length=533, Percent_Identity=23.6397748592871, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789887, Length=522, Percent_Identity=24.5210727969349, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787495, Length=530, Percent_Identity=25.6603773584906, Blast_Score=69, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56763; Mature: 56763

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRL
CCHHHHHHHHHHHCCCCEEECCCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VQADRDNPAKVVPVLAESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMN
HHCCCCCCCEEEEHHHCCCCCCCCEEEEEEEEECEEEEECCCCCCHHHHHHHHHHHHHCC
RSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPAVALNILSTPIASIVDKKTVT
CCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE
ANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
CCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCCCH
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRP
HHHEEEEECCCHHHHHHCCCCHHEEEHHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCC
ELWQAARYLVDYQGITKDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEECCHHHHHHHHHCCC
KDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLPAAGSQVYGRVRAKQHQSAIRLWI
CCEEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEC
PDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQLQQE
CCHHCCCCCCCEEEECCCCCCEEECCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEEECCCC
>Mature Secondary Structure
MKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRL
CCHHHHHHHHHHHCCCCEEECCCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHH
VQADRDNPAKVVPVLAESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMN
HHCCCCCCCEEEEHHHCCCCCCCCEEEEEEEEECEEEEECCCCCCHHHHHHHHHHHHHCC
RSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPAVALNILSTPIASIVDKKTVT
CCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE
ANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNVPDP
CCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCCCH
SARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRP
HHHEEEEECCCHHHHHHCCCCHHEEEHHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCC
ELWQAARYLVDYQGITKDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEECCHHHHHHHHHCCC
KDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLPAAGSQVYGRVRAKQHQSAIRLWI
CCEEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEC
PDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQLQQE
CCHHCCCCCCCEEEECCCCCCEEECCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK
HHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]