Click here to switch to the map view.

The map label for this gene is ddpC [H]

Identifier: 153950409

GI number: 153950409

Start: 4014983

End: 4015819

Strand: Direct

Name: ddpC [H]

Synonym: YpsIP31758_3553

Alternate gene names: 153950409

Gene position: 4014983-4015819 (Clockwise)

Preceding gene: 153949959

Following gene: 153947272

Centisome position: 85.0

GC content: 55.08

Gene sequence:

>837_bases
ATGCCAATAATAAAGTTCTACCGCACGCTGAAGCGTTCCCCGTCCACCAGCATAGGTCTGTTTATTCTATCACTGCTGGT
TATCATTGCAGTTTTTGCTCCGTGGCTTGCTCCACAGGACCCTAACTGGCAAAACGCAGCCGATCGGTTGTTGCCGCCGG
GTGACTCGGGCCACTTGCTGGGCACCGATAGTTATGGCCGCGATATGCTGTCGCGTCTGATTTACGGTACCCGGCCAACC
TTGGGATTGGTGCTGCTGGTCACCGTGATCACATTGCCTCTGGGGTTGTTGGTCGGGGTGCTTTCTGGCTATTACGGCGG
CTGGCTCGAACGCATTCTGATGCGAATCACTGATGTGGTGATGTCGATGCCACGGCTGATTCTGGCCTTTGCTTTTGTTG
CCATGCTCGGCCCCGGTTTACTGAACGGCGCATTAGCGCTGGCACTGACAACCTGGCCGGCGTATGCCCGTCAGGCCAGA
GCCGAAATTCAGTTATTACGTAAAAGTGATTATTTAGCTGCGGCTGAAATGATGGGCATCCGAGGGCTACGGCTCCTGTG
GGGCCACATATTGCCCATGTGTTTACCGTCTGCCGTTGTGCGTTTGGCACTGGATCTGGCGGGCATTATATTAGCAGCAG
CAGGTTTAGGTTTTCTGGGGCTGGGCGCTCGCCCACCCATGTCTGAGTGGGGTTCGATGGTCGCCGATGGGATGCAGGTG
ATTTTTGACCAATGGTGGATTGCGGCCATTCCCGGTTGTGCGATCCTACTCAGCAGCATGGCCTTTAACCTGTTAGGCGA
TGGCCTACGCGATATTCTGGATCCTCACCATGACTGA

Upstream 100 bases:

>100_bases
CTTGCTGCTCGGTATGTGCTTTATTTTGATTAACAATGTGACGGATCTGCTCGTCCGCCTGCTAGATCCGAGAACGCGCT
GATATGTCGATGATGCTGAT

Downstream 100 bases:

>100_bases
TTCTATTTTTACCGTCGATAACCTGTGCGTCGATTTTCAGCAACAGCGGGTGGTGGATAACATTTCGTTCCACCTCGGTC
ACGAACGTGTTGCTCTCGTA

Product: dipeptide/oligopeptide/nickel ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPIIKFYRTLKRSPSTSIGLFILSLLVIIAVFAPWLAPQDPNWQNAADRLLPPGDSGHLLGTDSYGRDMLSRLIYGTRPT
LGLVLLVTVITLPLGLLVGVLSGYYGGWLERILMRITDVVMSMPRLILAFAFVAMLGPGLLNGALALALTTWPAYARQAR
AEIQLLRKSDYLAAAEMMGIRGLRLLWGHILPMCLPSAVVRLALDLAGIILAAAGLGFLGLGARPPMSEWGSMVADGMQV
IFDQWWIAAIPGCAILLSSMAFNLLGDGLRDILDPHHD

Sequences:

>Translated_278_residues
MPIIKFYRTLKRSPSTSIGLFILSLLVIIAVFAPWLAPQDPNWQNAADRLLPPGDSGHLLGTDSYGRDMLSRLIYGTRPT
LGLVLLVTVITLPLGLLVGVLSGYYGGWLERILMRITDVVMSMPRLILAFAFVAMLGPGLLNGALALALTTWPAYARQAR
AEIQLLRKSDYLAAAEMMGIRGLRLLWGHILPMCLPSAVVRLALDLAGIILAAAGLGFLGLGARPPMSEWGSMVADGMQV
IFDQWWIAAIPGCAILLSSMAFNLLGDGLRDILDPHHD
>Mature_277_residues
PIIKFYRTLKRSPSTSIGLFILSLLVIIAVFAPWLAPQDPNWQNAADRLLPPGDSGHLLGTDSYGRDMLSRLIYGTRPTL
GLVLLVTVITLPLGLLVGVLSGYYGGWLERILMRITDVVMSMPRLILAFAFVAMLGPGLLNGALALALTTWPAYARQARA
EIQLLRKSDYLAAAEMMGIRGLRLLWGHILPMCLPSAVVRLALDLAGIILAAAGLGFLGLGARPPMSEWGSMVADGMQVI
FDQWWIAAIPGCAILLSSMAFNLLGDGLRDILDPHHD

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=272, Percent_Identity=44.4852941176471, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1789964, Length=280, Percent_Identity=42.1428571428571, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1787054, Length=275, Percent_Identity=38.1818181818182, Blast_Score=192, Evalue=1e-50,
Organism=Escherichia coli, GI1789889, Length=244, Percent_Identity=41.3934426229508, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787549, Length=269, Percent_Identity=34.5724907063197, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787498, Length=259, Percent_Identity=32.4324324324324, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788505, Length=234, Percent_Identity=30.3418803418803, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30124; Mature: 29993

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PIIKFYRTLKRSPSTSIGLFILSLLVIIAVFAPWLAPQDPNWQNAADRLLPPGDSGHLL
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC
GTDSYGRDMLSRLIYGTRPTLGLVLLVTVITLPLGLLVGVLSGYYGGWLERILMRITDVV
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSMPRLILAFAFVAMLGPGLLNGALALALTTWPAYARQARAEIQLLRKSDYLAAAEMMGI
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGLRLLWGHILPMCLPSAVVRLALDLAGIILAAAGLGFLGLGARPPMSEWGSMVADGMQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
IFDQWWIAAIPGCAILLSSMAFNLLGDGLRDILDPHHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]