Click here to switch to the map view.

The map label for this gene is rhaA

Identifier: 153947619

GI number: 153947619

Start: 4231512

End: 4232768

Strand: Direct

Name: rhaA

Synonym: YpsIP31758_3756

Alternate gene names: 153947619

Gene position: 4231512-4232768 (Clockwise)

Preceding gene: 153947258

Following gene: 153948153

Centisome position: 89.59

GC content: 53.06

Gene sequence:

>1257_bases
ATGACGAACTCTATTGAACAGGCCTGGGATCTGGCTAAACAGCGTTTTGCCGCTGTCGGCGTTGATGTTGATGCCGCACT
CACCCGTCTTGATACGCTACCGGTCTCCATGCACTGCTGGCAAGGCGATGATGTCACCGGTTTTGAGGATCCCGATGGCG
TATTGACCGGCGGAATTCAGGCAACAGGAAACTACCCCGGCAAAGCGCGCAATGCGACCGAGTTGCGTTCTGACCTTGAA
TTGGCTTTGGCATTAATTCCTGGCCCTAAGCGCCTCAATTTACATGCTATTTATCTGGAATCTGACACGCCGGTTGCGCG
CAATAAAATTGAGCCGCGCCACTTTAGCCACTGGGTTGCATGGGCCAAAAAACACCAGTTGGGGCTGGATTTTAACCCCT
CTTGCTTCTCTCACCCACTCAGCGCTGACGGCTTTACCTTGTCTCATGCTGATCCGGAAATCCGCCAGTTCTGGATTGAA
CACTGTCAGGCGAGTCGCCGGATTTCTGCCTATTTTGGTGAACAGTTAGGAACGCCGTCGGTCATGAATATCTGGATCCC
CGATGGCATGAAAGACACGCCGATTGATCGCCTTGCCCCCCGTCAGCGCCTGCTATCGGCTCTGGATGAAGTCATCAGCG
AGAAGTTAAACCCGGCTCACCATATTGATGCGGTTGAGAGCAAATTGTTTGGTATTGGTGCTGAAAGTTACACCGTGGGC
TCTAACGAGTTTTATATGGGCTATGCCGCCAGTCGCCAAACGGCGCTGTGTCTGGATGCGGGTCACTTCCATCCAACCGA
GGTGATTTCCGACAAAATATCCAGCGCCATGCTGTATGTCCCACGCCTGCTATTGCATGTCAGCCGTCCGGTTCGCTGGG
ACAGTGACCATGTGGTGTTACTGGATGATGAAACCCAAGCCATCGCCAGCGAAATTATTCGTCACAACCTGTTTGATCGG
GTTCACATCGGCCTCGACTTCTTTGATGCCTCCATTAACCGGATTGCCGCTTGGGTTATTGGCACCCGCAACATGAAAAA
GGCCCTGTTACGCGCCTTACTGGAGCCGACCGACAGGCTACGTCAACTGGAATTACGCGGTGATTACACTGCACGGCTGG
CGCTGCTGGAAGAACAAAAATCCCTGCCATGGCAAGCCATCTGGGAAGGTTACTGCCAGCGCAATGACGTACCGGTTGAT
GCCCGCTGGCTTGACGCAGTACGTGAATATGAACAACAGATTCTCAGCCAACGTTAA

Upstream 100 bases:

>100_bases
ACTTCCCATTGCACCATTTATCCCCTCACGACAATTCGGACTTTGCTGCCCATTGGCTGCAATTCCAGTCACTGAGTCAA
TTACCTAAGGAACTTTGCAT

Downstream 100 bases:

>100_bases
GGACTCGTAATTATGCAAGCTATTCTATCTTCCTGGTTTATTCAGGGAATGATTAAAGCCACCAGTGATATGTGGCACAA
AGGGTGGGATGAACGTAACG

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLE
LALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIE
HCQASRRISAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDR
VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVD
ARWLDAVREYEQQILSQR

Sequences:

>Translated_418_residues
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLE
LALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIE
HCQASRRISAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDR
VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVD
ARWLDAVREYEQQILSQR
>Mature_417_residues
TNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLEL
ALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVAWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEH
CQASRRISAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGS
NEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDRV
HIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDA
RWLDAVREYEQQILSQR

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family

Homologues:

Organism=Escherichia coli, GI48994990, Length=418, Percent_Identity=85.1674641148325, Blast_Score=758, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAA_YERP3 (A7FN82)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001402710.1
- ProteinModelPortal:   A7FN82
- SMR:   A7FN82
- STRING:   A7FN82
- GeneID:   5384501
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_3756
- NMPDR:   fig|349747.3.peg.2957
- eggNOG:   COG4806
- HOGENOM:   HBG313138
- OMA:   VNLHAIY
- ProtClustDB:   PRK01076
- BioCyc:   YPSE349747:YPSIP31758_3756-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00541
- InterPro:   IPR009308
- InterPro:   IPR013022
- Gene3D:   G3DSA:3.20.20.150
- TIGRFAMs:   TIGR01748

Pfam domain/function: PF06134 RhaA; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: =5.3.1.14

Molecular weight: Translated: 47175; Mature: 47044

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCEE
ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVA
ECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHHHH
WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRISAYFGEQLGTPS
HHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEC
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRL
ECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHH
RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HEEHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCEE
ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVA
ECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHHHH
WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRISAYFGEQLGTPS
HHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEC
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRL
ECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHH
RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HEEHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA