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The map label for this gene is rhaB [H]

Identifier: 153947258

GI number: 153947258

Start: 4229953

End: 4231515

Strand: Direct

Name: rhaB [H]

Synonym: YpsIP31758_3755

Alternate gene names: 153947258

Gene position: 4229953-4231515 (Clockwise)

Preceding gene: 153947580

Following gene: 153947619

Centisome position: 89.55

GC content: 53.1

Gene sequence:

>1563_bases
ATGCCCACACCATCTACATGTTCGCCATCTACATATGCACAACCCATATGTTCACAACCCACATGTTCACCATCGGCAGT
CACATCGCCAAAAGCTGCACGGCACATGGTTGCTATTGACCTTGGCGCGTCCAGCGGACGGGTGATGCTGGCAAGTTATT
ATCCCGGTCAGCAACAGCTTACGTTGCGGGAAGTCTGCCGCTTTACCAACCAGATTAAATCTATTGATGGCTCCGATGTC
TGGGATATCGATGCCATTGAACAATCTATCCGTGAGGGACTGAGCCAACTCGACAGTGAAGGGATAGCGCTGGACAGCAT
CGGTATTGATAGCTGGGGAGTTGATTTTGTTTTGCTTGATAAGCAAGGGAAACGGATCGGACAGCCCGTATCTTACCGTG
ATAGTCGTACTCAGGGAGTGATGGCACGGGCGCAGCAGACGCTGGGTAGCAATGCGATTTATCGCCGCACCGGTATTCAG
TTCTTGCCGTTCAATACGCTGTATCAACTGCGGGCATTAAGTGAACAACAACCTCACTTACTCGCCGATGTTGCCCACCT
ATTATTGATCCCAGACTATTTGCATTACCGCCTTACCGGCCAGCTAAACTGGGAATATACCAATGCCAGTACTACCCAGT
TGCTCAACATCGAAACCGGCGATTGGGATAGCGATTTACTGGCCTATGCCGGCGTACCGGCCCATTGGTTTGCCAAACCC
GGCAAACCTGGCAATACCATCGGCTATTGGCACAGCGCCAACGGTCAGCAGGTTCCGGTGGTGGCCGTTGCCACCCATGA
CACGGCTAGCGCGGTTCTTGCCGCCCCGCTTATTGATGCTGATGCTGCCTATCTTAGCTCCGGTACCTGGTCACTTATGG
GCTTCGAAAGCGGTACACCACTCACCCACCAGCAGGCGCAGTGCAGCAATATCACCAACGAAGGGGGCGCTGAAGGCCGC
TACCGCGTACTCAAAAATATTATGGGTCTGTGGCTACTGCAACGGGCGACGGATGAATTGCAGATTGACGATTTACCGCA
GCTTATTGAGCAAGCGGCACGACAACCCGCTTGCCGCTCGCTGATCAATCCCAATGACAGCCGTTTTATTAACCCACCCA
ATATGTGCCGTGAGATCCAAAACGCCTGCCGTGAACATCAGTTCCCCGTGCCGAACACGGCCGCCCAACTGGCCCGCTGT
ATCTTTGATAGCCTCGCCATGTTGTACCGGCAAGTGGCTCAAGAATTGGCAACACTCCGCGGACGCCCAATCAGCCACTT
GCATATCGTCGGTGGCGGCTGTCAGAACCAATTTCTGAATCAACTGTGTGCCGATGCCTGTGCCTTGAATGTAAGCATGG
GGCCGGTTGAGGCCTCCACGCTCGGCAATATTGGTAGCCAATTAATCTCGCTGGGTGAGGTCGCTGATGTCACCCATTAC
CGCCGTATCGTGGCGAATAACTTCCCATTGCACCATTTATCCCCTCACGACAATTCGGACTTTGCTGCCCATTGGCTGCA
ATTCCAGTCACTGAGTCAATTACCTAAGGAACTTTGCATATGA

Upstream 100 bases:

>100_bases
TCATTCTGCCATCAAGCCATAGCGGTTGGCAGTGATGAGAAGGTCGTCGAACAGGCAAATTTCTACACTGTTGGCATTGA
GAAACAACAGGCCGCTTATC

Downstream 100 bases:

>100_bases
CGAACTCTATTGAACAGGCCTGGGATCTGGCTAAACAGCGTTTTGCCGCTGTCGGCGTTGATGTTGATGCCGCACTCACC
CGTCTTGATACGCTACCGGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MPTPSTCSPSTYAQPICSQPTCSPSAVTSPKAARHMVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDV
WDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQ
FLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKP
GKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGR
YRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARC
IFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACALNVSMGPVEASTLGNIGSQLISLGEVADVTHY
RRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI

Sequences:

>Translated_520_residues
MPTPSTCSPSTYAQPICSQPTCSPSAVTSPKAARHMVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDV
WDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQ
FLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKP
GKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGR
YRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARC
IFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACALNVSMGPVEASTLGNIGSQLISLGEVADVTHY
RRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI
>Mature_519_residues
PTPSTCSPSTYAQPICSQPTCSPSAVTSPKAARHMVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDVW
DIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQF
LPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPG
KPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGRY
RVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCI
FDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACALNVSMGPVEASTLGNIGSQLISLGEVADVTHYR
RIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=486, Percent_Identity=62.5514403292181, Blast_Score=626, Evalue=1e-180,
Organism=Escherichia coli, GI1789168, Length=383, Percent_Identity=26.6318537859008, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 57012; Mature: 56881

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPSTCSPSTYAQPICSQPTCSPSAVTSPKAARHMVAIDLGASSGRVMLASYYPGQQQL
CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCCEEEEEECCCCCCH
TLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEC
KQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCEEECHHHHHHHHHHCCCCCHH
LADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKP
HHHHHHHHHHHHHHEEEEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHCCCCHHHCCCC
GKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSGTWSLMGFESGTP
CCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCC
LTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRS
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHH
LINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLR
HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRPISHLHIVGGGCQNQFLNQLCADACALNVSMGPVEASTLGNIGSQLISLGEVADVTHY
CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PTPSTCSPSTYAQPICSQPTCSPSAVTSPKAARHMVAIDLGASSGRVMLASYYPGQQQL
CCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHEEEEEEECCCCCCEEEEEECCCCCCH
TLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVDFVLLD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEC
KQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHCCCEEECHHHHHHHHHHCCCCCHH
LADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKP
HHHHHHHHHHHHHHEEEEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHCCCCHHHCCCC
GKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAAPLIDADAAYLSSGTWSLMGFESGTP
CCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCCC
LTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQPACRS
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHH
LINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLR
HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRPISHLHIVGGGCQNQFLNQLCADACALNVSMGPVEASTLGNIGSQLISLGEVADVTHY
CCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLPKELCI
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA