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The map label for this gene is rhaD

Identifier: 153948153

GI number: 153948153

Start: 4232781

End: 4233605

Strand: Direct

Name: rhaD

Synonym: YpsIP31758_3757

Alternate gene names: 153948153

Gene position: 4232781-4233605 (Clockwise)

Preceding gene: 153947619

Following gene: 153949003

Centisome position: 89.61

GC content: 52.85

Gene sequence:

>825_bases
ATGCAAGCTATTCTATCTTCCTGGTTTATTCAGGGAATGATTAAAGCCACCAGTGATATGTGGCACAAAGGGTGGGATGA
ACGTAACGGCGGCAATATCAGCTTGCGACTGCTCGCTGAAGAGGTTGAACCTTATCGTCGTGATTTTTACCAACAACCCC
GCAAAGTGGAGCTCACGCAACCGGCTCCCGAACTGGCAAATAGCTGGTTCCTTGTCACCGGTTCCGGCAAGTTTTTCCGC
AATGTTGAATTGAACCCAGCGGAAAATCTGGTGTTGCTACAAGTCAGCAATGATGGCATGGCTTATGACATTCACTGGGG
CCTAACTCAGGGAGGGTTACCCACCTCGGAGCTGGCCGCACACTTCCAATCTCACATCGTCAGGATGCAGGTCAGCGGCG
GCACCAACCGGGTCATTATGCACTGCCATGCCACCAATCTGATTGCCCTGAGTTATGTACAAAAACTGGAGAACGCCAGC
TTCACGCGCCTGTTATGGGAAGGCAGTACGGAATGTTTGGTGGTATTTCCTGATGGGATTGGCATTGTGCCATGGATGGT
GCCGGGCACCGATGGGATCGGTACACAAACGGCGGAGCAAATGCGTGAACACAGCCTGGTGCTTTGGCCTTTCCACGGTA
TTTTTGGCAGCGGGCCCACACTGGATGACGCCTTTGGCCTGATTGATACCGCCGAGAAATCAGCCGAAATCATGGTGAAA
GTCCTGTCGATGGGCGGCAAAAAACAGACCATTTCACGTGAACAACTGATCGCGCTGGCGGCTCGTTTTGATGTTACGCC
GATGGCAGCGGCGCTGGACGCCTAA

Upstream 100 bases:

>100_bases
TTACTGCCAGCGCAATGACGTACCGGTTGATGCCCGCTGGCTTGACGCAGTACGTGAATATGAACAACAGATTCTCAGCC
AACGTTAAGGACTCGTAATT

Downstream 100 bases:

>100_bases
TCCCCTCGATTAAAGCCCTGGCTAACGTCGGGGCAAATCATTTATGCGTTATTTGAGGAGTACAGTATGAGTTTCATGTT
GGCACTACCGAAAATCAGCT

Product: rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQPAPELANSWFLVTGSGKFFR
NVELNPAENLVLLQVSNDGMAYDIHWGLTQGGLPTSELAAHFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENAS
FTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA

Sequences:

>Translated_274_residues
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQPAPELANSWFLVTGSGKFFR
NVELNPAENLVLLQVSNDGMAYDIHWGLTQGGLPTSELAAHFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENAS
FTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA
>Mature_274_residues
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQPAPELANSWFLVTGSGKFFR
NVELNPAENLVLLQVSNDGMAYDIHWGLTQGGLPTSELAAHFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENAS
FTRLLWEGSTECLVVFPDGIGIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily

Homologues:

Organism=Escherichia coli, GI1790336, Length=272, Percent_Identity=68.0147058823529, Blast_Score=400, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAD_YERP3 (A7FN83)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001402711.1
- ProteinModelPortal:   A7FN83
- SMR:   A7FN83
- STRING:   A7FN83
- GeneID:   5384384
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_3757
- eggNOG:   COG0235
- HOGENOM:   HBG416653
- OMA:   MSHIARL
- ProtClustDB:   PRK03634
- BioCyc:   YPSE349747:YPSIP31758_3757-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00770
- InterPro:   IPR001303
- InterPro:   IPR013447
- Gene3D:   G3DSA:3.40.225.10
- TIGRFAMs:   TIGR02624

Pfam domain/function: PF00596 Aldolase_II; SSF53639 Aldolase_II_N

EC number: =4.1.2.19

Molecular weight: Translated: 30330; Mature: 30330

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: ACT_SITE 117-117

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCHHHHHHHCCCCEEEECC
PAPELANSWFLVTGSGKFFRNVELNPAENLVLLQVSNDGMAYDIHWGLTQGGLPTSELAA
CCHHHCCCEEEEEECCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHHH
HFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENASFTRLLWEGSTECLVVFPDGI
HHHHCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCC
GIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
CCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHCCHHCCHHHHHHHHH
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA
HHHCCCCCHHCCHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MQAILSSWFIQGMIKATSDMWHKGWDERNGGNISLRLLAEEVEPYRRDFYQQPRKVELTQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCHHHHHHHCCCCEEEECC
PAPELANSWFLVTGSGKFFRNVELNPAENLVLLQVSNDGMAYDIHWGLTQGGLPTSELAA
CCHHHCCCEEEEEECCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHHH
HFQSHIVRMQVSGGTNRVIMHCHATNLIALSYVQKLENASFTRLLWEGSTECLVVFPDGI
HHHHCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCC
GIVPWMVPGTDGIGTQTAEQMREHSLVLWPFHGIFGSGPTLDDAFGLIDTAEKSAEIMVK
CCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHCCHHCCHHHHHHHHH
VLSMGGKKQTISREQLIALAARFDVTPMAAALDA
HHHCCCCCHHCCHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA