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The map label for this gene is ytfE [C]

Identifier: 153947006

GI number: 153947006

Start: 4099601

End: 4100266

Strand: Direct

Name: ytfE [C]

Synonym: YpsIP31758_3632

Alternate gene names: 153947006

Gene position: 4099601-4100266 (Clockwise)

Preceding gene: 153947556

Following gene: 153948828

Centisome position: 86.8

GC content: 48.8

Gene sequence:

>666_bases
ATGGATTACCGCAATCAGTCTCTGGGCGCACTGGCTATCGCTATTCCTCGGGCCACAAAGTTATTCCGTCAACATCAGCT
CGATTTCTGCTGTGGCGGCAAACAAACACTCTTACGGGCCGCCAATAAGTTGAATCTGGATATTGATGCGCTGGAAGCAC
AATTGAGTGCATTGCAAACCGAACCTCACTCATCTGAAGATTGGCAACAACAGCCACTGACAAACCTCATTAGTTTTATC
ATCAGCCGCTACCATGATCGCCATCGTGAGCAGCTACCAGAACTGGTTCTCATGGCGGAAAAGGTTGAACGGGTACACGG
CGATAAACCCACCTGTCCTCGTGGGCTGGCAGCAGAACTCAGTGCGATTTTAGAAGAGTTGACTCAACATATGTATAAAG
AGGAGCAGATCCTGTTCCCGATGATCCAACGAGGCATGGGTTCTCAGGCCAGTGGGCCAATATTTGTGATGGAAGCGGAG
CACGATGCGGTTGGGCAGCAATTAGACGTGGTAAAACAACTCACACAAAATGTGACACCACCAGAAGGGGCCTGTAATAC
CTGGCGGGCGCTTTACACCGGTATCAATGAATTCATTACTGACCTGATGGAACATATTCATCTGGAAAATAATTTACTGT
TTCCCCGTGCGCTAAGGGGCGAATAA

Upstream 100 bases:

>100_bases
TGCCGTTACCCCATAATACCCACTTGGAGTTATATCACAATCTATAACATGTATTTATTATGCATGTTATAGATGTATAA
TTACTCAATGAGGTGTCATT

Downstream 100 bases:

>100_bases
CTCACTAACTATTTATTCTCACCGTAAATATTCTTATCGTAAATAAACGCCAAAGGACGACACCCTGTCGCCCTTTGGCA
TAATCGGTACCAAGGAATTA

Product: iron-sulfur cluster repair di-iron protein

Products: NA

Alternate protein names: RCMNS

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDYRNQSLGALAIAIPRATKLFRQHQLDFCCGGKQTLLRAANKLNLDIDALEAQLSALQTEPHSSEDWQQQPLTNLISFI
ISRYHDRHREQLPELVLMAEKVERVHGDKPTCPRGLAAELSAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAE
HDAVGQQLDVVKQLTQNVTPPEGACNTWRALYTGINEFITDLMEHIHLENNLLFPRALRGE

Sequences:

>Translated_221_residues
MDYRNQSLGALAIAIPRATKLFRQHQLDFCCGGKQTLLRAANKLNLDIDALEAQLSALQTEPHSSEDWQQQPLTNLISFI
ISRYHDRHREQLPELVLMAEKVERVHGDKPTCPRGLAAELSAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAE
HDAVGQQLDVVKQLTQNVTPPEGACNTWRALYTGINEFITDLMEHIHLENNLLFPRALRGE
>Mature_221_residues
MDYRNQSLGALAIAIPRATKLFRQHQLDFCCGGKQTLLRAANKLNLDIDALEAQLSALQTEPHSSEDWQQQPLTNLISFI
ISRYHDRHREQLPELVLMAEKVERVHGDKPTCPRGLAAELSAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAE
HDAVGQQLDVVKQLTQNVTPPEGACNTWRALYTGINEFITDLMEHIHLENNLLFPRALRGE

Specific function: Involved in anaerobic NO protection

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790654, Length=221, Percent_Identity=61.9909502262443, Blast_Score=298, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RCMNS_YERP3 (A7FMV8)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001402586.1
- ProteinModelPortal:   A7FMV8
- STRING:   A7FMV8
- GeneID:   5387097
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_3632
- eggNOG:   COG2846
- HOGENOM:   HBG308681
- OMA:   GNPINAM
- ProtClustDB:   PRK10992
- BioCyc:   YPSE349747:YPSIP31758_3632-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01606
- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312
- TIGRFAMs:   TIGR03652

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N

EC number: NA

Molecular weight: Translated: 25049; Mature: 25049

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYRNQSLGALAIAIPRATKLFRQHQLDFCCGGKQTLLRAANKLNLDIDALEAQLSALQT
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
EPHSSEDWQQQPLTNLISFIISRYHDRHREQLPELVLMAEKVERVHGDKPTCPRGLAAEL
CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
SAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAEHDAVGQQLDVVKQLTQNVTP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
PEGACNTWRALYTGINEFITDLMEHIHLENNLLFPRALRGE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MDYRNQSLGALAIAIPRATKLFRQHQLDFCCGGKQTLLRAANKLNLDIDALEAQLSALQT
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
EPHSSEDWQQQPLTNLISFIISRYHDRHREQLPELVLMAEKVERVHGDKPTCPRGLAAEL
CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
SAILEELTQHMYKEEQILFPMIQRGMGSQASGPIFVMEAEHDAVGQQLDVVKQLTQNVTP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
PEGACNTWRALYTGINEFITDLMEHIHLENNLLFPRALRGE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA