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The map label for this gene is ytfB [H]

Identifier: 153948828

GI number: 153948828

Start: 4101333

End: 4102073

Strand: Direct

Name: ytfB [H]

Synonym: YpsIP31758_3634

Alternate gene names: 153948828

Gene position: 4101333-4102073 (Clockwise)

Preceding gene: 153947006

Following gene: 153948787

Centisome position: 86.83

GC content: 51.42

Gene sequence:

>741_bases
ATGGGCAGAATCGCGCCCAGGAGAAGGAAAAATAATCGGGTTTATCAGCCGCTGCTACACAGTTGGCTAACCATTAGGCA
GAAGGTTCTACCGGATGCAAAAAATACTGATGAGCAAAACCTGATATCCGAAATCAATGCACCAGAACAGAGGGTGGATC
CTGATAACGTGACAGAACCTGCGCTAGCGCCCACACAGAGAAAAGGCGTTCAGAGCATTAAAGAACTGTGGCTAAAAATT
TGGCACCTGCCGGACAGTTTTCAGTGGATGGAGCCGTTGCCTTTCTTCCACCGCCGCGGGGTTATTATCGCTACCACTGT
ATTGCTGCTGGCACTGCTGTGGCCCGCTTCCCGTGATAATACTGACCTTTCCTTCCCCGTTAGCGCCCCATCGACCAGCG
TGCCACTACAGGCCCAATTACAGGACAACAATGACGTACCCGTCCCCCCCAAAGTTTCCCCTTCTGAGACGACACAAGGA
AACTGGCAGAGCTATCAGGTCCAAACGGGTAAAACGTTGGCGCAACTGTTCCGTGATAATAACCTGCCAGTCAACGATGT
TTTTGCCATGGCTCAGGTCGAAGGCAGCGATAAACCGCTGAGTAACCTGAAGGCTGGGCAAGAGGTCAAGATCATGCTAG
ATGCACAAGGCGCAGTCACCGCACTGGCGATTGAAACCCCAGAGAACACTGAAGTGCTGTTTTCCCGACAAAACGATGGT
AGCTATCGTCGCGAACATTAA

Upstream 100 bases:

>100_bases
AGAGAGTTAATGGGCTAGAGAGTTAACAGGCTATATACTTAGAAGCCTATGAGCCTGCTGACCATCTGCAGTATCCATTT
TTATTTTAAGAGAGGTTAGC

Downstream 100 bases:

>100_bases
TCGTCACGTTGGCTTACTGCCCCTATCTACCCTGTGATCTTCTTTATTATTGTCACTCTCACTCGTTCAAATTAGGTTAT
TTCTTGGATAGTTATCGCTA

Product: opacity-associated protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MGRIAPRRRKNNRVYQPLLHSWLTIRQKVLPDAKNTDEQNLISEINAPEQRVDPDNVTEPALAPTQRKGVQSIKELWLKI
WHLPDSFQWMEPLPFFHRRGVIIATTVLLLALLWPASRDNTDLSFPVSAPSTSVPLQAQLQDNNDVPVPPKVSPSETTQG
NWQSYQVQTGKTLAQLFRDNNLPVNDVFAMAQVEGSDKPLSNLKAGQEVKIMLDAQGAVTALAIETPENTEVLFSRQNDG
SYRREH

Sequences:

>Translated_246_residues
MGRIAPRRRKNNRVYQPLLHSWLTIRQKVLPDAKNTDEQNLISEINAPEQRVDPDNVTEPALAPTQRKGVQSIKELWLKI
WHLPDSFQWMEPLPFFHRRGVIIATTVLLLALLWPASRDNTDLSFPVSAPSTSVPLQAQLQDNNDVPVPPKVSPSETTQG
NWQSYQVQTGKTLAQLFRDNNLPVNDVFAMAQVEGSDKPLSNLKAGQEVKIMLDAQGAVTALAIETPENTEVLFSRQNDG
SYRREH
>Mature_245_residues
GRIAPRRRKNNRVYQPLLHSWLTIRQKVLPDAKNTDEQNLISEINAPEQRVDPDNVTEPALAPTQRKGVQSIKELWLKIW
HLPDSFQWMEPLPFFHRRGVIIATTVLLLALLWPASRDNTDLSFPVSAPSTSVPLQAQLQDNNDVPVPPKVSPSETTQGN
WQSYQVQTGKTLAQLFRDNNLPVNDVFAMAQVEGSDKPLSNLKAGQEVKIMLDAQGAVTALAIETPENTEVLFSRQNDGS
YRREH

Specific function: Unknown

COG id: COG3061

COG function: function code M; Cell envelope opacity-associated protein A

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082389, Length=211, Percent_Identity=43.6018957345972, Blast_Score=149, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013731
- InterPro:   IPR007340 [H]

Pfam domain/function: PF04225 OapA; PF08525 OapA_N [H]

EC number: NA

Molecular weight: Translated: 27731; Mature: 27600

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRIAPRRRKNNRVYQPLLHSWLTIRQKVLPDAKNTDEQNLISEINAPEQRVDPDNVTEP
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCC
ALAPTQRKGVQSIKELWLKIWHLPDSFQWMEPLPFFHRRGVIIATTVLLLALLWPASRDN
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCC
TDLSFPVSAPSTSVPLQAQLQDNNDVPVPPKVSPSETTQGNWQSYQVQTGKTLAQLFRDN
CCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCC
NLPVNDVFAMAQVEGSDKPLSNLKAGQEVKIMLDAQGAVTALAIETPENTEVLFSRQNDG
CCCHHHHHHHEEECCCCCCHHHCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCCC
SYRREH
CCCCCC
>Mature Secondary Structure 
GRIAPRRRKNNRVYQPLLHSWLTIRQKVLPDAKNTDEQNLISEINAPEQRVDPDNVTEP
CCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCC
ALAPTQRKGVQSIKELWLKIWHLPDSFQWMEPLPFFHRRGVIIATTVLLLALLWPASRDN
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCC
TDLSFPVSAPSTSVPLQAQLQDNNDVPVPPKVSPSETTQGNWQSYQVQTGKTLAQLFRDN
CCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHCC
NLPVNDVFAMAQVEGSDKPLSNLKAGQEVKIMLDAQGAVTALAIETPENTEVLFSRQNDG
CCCHHHHHHHEEECCCCCCHHHCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEECCCC
SYRREH
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]