Click here to switch to the map view.

The map label for this gene is yhdH [H]

Identifier: 153951915

GI number: 153951915

Start: 778242

End: 779576

Strand: Direct

Name: yhdH [H]

Synonym: JJD26997_0879

Alternate gene names: 153951915

Gene position: 778242-779576 (Clockwise)

Preceding gene: 153952355

Following gene: 153951231

Centisome position: 42.18

GC content: 29.89

Gene sequence:

>1335_bases
TTGAGTTCTAAATTTTCAAAAATAGGTTTCATTTTAGCGGTAGCAGGTTCAGCCGTAGGCTTGGGTAATGCTTGGAAATT
TCCAACACTGGTAGGTCAAAGTGGAGGATCTGCTTTTATTTTGCTTTATATAATTCTTACTTTGGGTGTAGGTTTTGTAA
TATTTTTAGCTGAACTTAGCATAGGAAAAATTAGTGAAAAAGATCCGGTTAATGCCTATGAAAAGTTAGCACCTTCAAAT
AAAAAAGCTTGGTCTTATGTTGGTTTTACTATGGTGGGGGCGATTTTAATAGTTTCTTTTTATACCTTGGTGATTGGTTG
GATAGTTAAATATGTGTTTTTAAGTATCACTGGAAATTTGCCTATGGATCTAGAAGCAAGTAAAGCGCAGTTTGGATTTT
TTACAAGTGAGGATTTTTTAAGTCAGTTTATTTGTTTTACTTTGGTTTTTTTGTGTGTTTTTTATATTGTTTCTAAAGGT
CTTAAGAATGGGATTGAAAAGTTAAATGTTTGGATGATGCCTTCATTATTTATTTTACTTATTTTGATGCTTGTTTATGC
TATTAGTAAAGATGGTTTTATGATGGCGGTTAAATTTCTTTTTGTACCTGATTTTTCTAAAATCAATACTTCAAATGTTC
TTGAAGCTTTGGGACTTGCCTTTTTTAGTCTTTCTTTGGGTGTTGGAACGATTATTACTTATTCTGCTAACCTGCCTGAT
AAAACTAATTTTATTACTAGTACTTTAAATATTATTTTTATCAATCTTTTAGTTGGTTTATTAATGGGTTTGGTTGTTTT
TACTTTTATCTTTGAATTTGGTTACAATCCTAATCAGCAAGGACCAGGACTTGTTTTTATTTCCTTAGCTACTTTATTTG
AAAAAATTGGAGTAATTGGTTGTATTTTTGGAGCAGCGTTTTTTATTTCTTTAATCTTTGCTGGTATTACTTCAGCTGTT
TCAATGATAGAGCCTTTTGCTTTTTATCTTATTAATACTTTTGGTATGAGCCGTAAAAAAGCTTTGATTTTAATAGGAAT
TGTTGTTTATATTTTAGGAATGTTGTGTATTTTATCTTCTTTAAAAAGCACTCAATTTGGATTTTTTGGAATGAGTTTTT
TTGATTTGCTTGATAGTATTTCAAGCAAGGTTATCATGCCTTTAGGTGGAATTTTGGCAGCTATTTTTGTGGGATTTGTG
ATGAAAAAAGAAGCTTTAAAAATTTTATTTAAACCTTATATGAGGGGTATATTTTTTGAACTTTGGTATGTATTTTTGAG
ATTTATTTCCCCTTTGGCTGTTGTTATAGTTATGATAGCTGCTTTTTTAAAGTGA

Upstream 100 bases:

>100_bases
ATTCACATTTTTGATTTAAATTTGATTGTTTTCAATAAAGCTTAAAAGTTTTTTTGCTTTAATAATATTTTAAAATAATT
TTTAAGTTAAGGTTGTAGCA

Downstream 100 bases:

>100_bases
GTTTGAAAAATAATGAGAGCATATTTTTCAAAAATCGGTTTTGTATTGGTTGTTGCTGGTGGAGCCGTTGGTTTGGGTAA
TGCTTGGAAATTTCCAACTT

Product: putative sodium transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYIILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSN
KKAWSYVGFTMVGAILIVSFYTLVIGWIVKYVFLSITGNLPMDLEASKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKG
LKNGIEKLNVWMMPSLFILLILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALGLAFFSLSLGVGTIITYSANLPD
KTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYNPNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAV
SMIEPFAFYLINTFGMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSISSKVIMPLGGILAAIFVGFV
MKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK

Sequences:

>Translated_444_residues
MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYIILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSN
KKAWSYVGFTMVGAILIVSFYTLVIGWIVKYVFLSITGNLPMDLEASKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKG
LKNGIEKLNVWMMPSLFILLILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALGLAFFSLSLGVGTIITYSANLPD
KTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYNPNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAV
SMIEPFAFYLINTFGMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSISSKVIMPLGGILAAIFVGFV
MKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK
>Mature_443_residues
SSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYIILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNK
KAWSYVGFTMVGAILIVSFYTLVIGWIVKYVFLSITGNLPMDLEASKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKGL
KNGIEKLNVWMMPSLFILLILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALGLAFFSLSLGVGTIITYSANLPDK
TNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYNPNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVS
MIEPFAFYLINTFGMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSISSKVIMPLGGILAAIFVGFVM
KKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=412, Percent_Identity=23.7864077669903, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4507041, Length=456, Percent_Identity=25.219298245614, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI21361581, Length=430, Percent_Identity=21.6279069767442, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI134304856, Length=332, Percent_Identity=25.6024096385542, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI188528618, Length=417, Percent_Identity=23.021582733813, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI171184408, Length=442, Percent_Identity=23.7556561085973, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI171184406, Length=442, Percent_Identity=23.7556561085973, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI171184404, Length=442, Percent_Identity=23.7556561085973, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI289191351, Length=506, Percent_Identity=23.7154150197628, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4557046, Length=506, Percent_Identity=23.7154150197628, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI289191377, Length=506, Percent_Identity=23.7154150197628, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI58219014, Length=293, Percent_Identity=29.3515358361775, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI7657587, Length=455, Percent_Identity=20.6593406593407, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI33354281, Length=292, Percent_Identity=27.3972602739726, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI197276623, Length=339, Percent_Identity=25.0737463126844, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI54607094, Length=339, Percent_Identity=25.0737463126844, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI197276625, Length=120, Percent_Identity=36.6666666666667, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI194018524, Length=297, Percent_Identity=24.9158249158249, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI11181770, Length=292, Percent_Identity=23.2876712328767, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI21361693, Length=119, Percent_Identity=34.453781512605, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI92859670, Length=117, Percent_Identity=35.8974358974359, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI67782317, Length=348, Percent_Identity=23.5632183908046, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI67782313, Length=348, Percent_Identity=23.5632183908046, Blast_Score=66, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=478, Percent_Identity=24.0585774058577, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17555248, Length=137, Percent_Identity=31.3868613138686, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI133952791, Length=214, Percent_Identity=26.1682242990654, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136952, Length=425, Percent_Identity=24, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI281364394, Length=432, Percent_Identity=24.3055555555556, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI28574704, Length=432, Percent_Identity=24.3055555555556, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI17136950, Length=432, Percent_Identity=24.3055555555556, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI28574702, Length=432, Percent_Identity=24.3055555555556, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24762620, Length=406, Percent_Identity=27.3399014778325, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24639514, Length=307, Percent_Identity=27.6872964169381, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221329674, Length=307, Percent_Identity=27.6872964169381, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639516, Length=307, Percent_Identity=27.6872964169381, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24652942, Length=438, Percent_Identity=21.9178082191781, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI45551088, Length=438, Percent_Identity=21.9178082191781, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI281365034, Length=435, Percent_Identity=22.2988505747126, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19921936, Length=439, Percent_Identity=24.6013667425968, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24582567, Length=473, Percent_Identity=22.8329809725159, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24661428, Length=434, Percent_Identity=23.5023041474654, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364136, Length=509, Percent_Identity=21.8074656188605, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24655079, Length=292, Percent_Identity=25.6849315068493, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI281363702, Length=480, Percent_Identity=23.5416666666667, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19921352, Length=496, Percent_Identity=20.9677419354839, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24584353, Length=496, Percent_Identity=20.9677419354839, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI45550877, Length=218, Percent_Identity=27.5229357798165, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654186, Length=116, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45551183, Length=117, Percent_Identity=36.7521367521368, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48812; Mature: 48680

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYIILTLGVGFVIFLAELS
CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYTLVIGWIVKYVFLSITGNL
HCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PMDLEASKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKGLKNGIEKLNVWMMPSLFILL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALGLAFFSLSLGVGTIITYSANLPD
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHEEEECCCCC
KTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYNPNQQGPGLVFISLATLFEKIGVIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHH
CIFGAAFFISLIFAGITSAVSMIEPFAFYLINTFGMSRKKALILIGIVVYILGMLCILSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LKSTQFGFFGMSFFDLLDSISSKVIMPLGGILAAIFVGFVMKKEALKILFKPYMRGIFFE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWYVFLRFISPLAVVIVMIAAFLK
HHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYIILTLGVGFVIFLAELS
CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYTLVIGWIVKYVFLSITGNL
HCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PMDLEASKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKGLKNGIEKLNVWMMPSLFILL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALGLAFFSLSLGVGTIITYSANLPD
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHEEEECCCCC
KTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYNPNQQGPGLVFISLATLFEKIGVIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHH
CIFGAAFFISLIFAGITSAVSMIEPFAFYLINTFGMSRKKALILIGIVVYILGMLCILSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LKSTQFGFFGMSFFDLLDSISSKVIMPLGGILAAIFVGFVMKKEALKILFKPYMRGIFFE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWYVFLRFISPLAVVIVMIAAFLK
HHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]