Click here to switch to the map view.

The map label for this gene is yrbE [H]

Identifier: 153951743

GI number: 153951743

Start: 1271731

End: 1272597

Strand: Direct

Name: yrbE [H]

Synonym: JJD26997_1431

Alternate gene names: 153951743

Gene position: 1271731-1272597 (Clockwise)

Preceding gene: 153952295

Following gene: 153951990

Centisome position: 68.92

GC content: 29.41

Gene sequence:

>867_bases
ATGAAAATAGGTATCATAGGCCTTGGAAAAATGGGGCAAAACCACTTAAATGAACTTAGTAAAAATTCTCATTTTAAACT
TAATGCACTTTTTGATCTTTGCAAAAATCCAAATCTAAATATTTTTGATGATATTTTTTATGATGATTTGGATAAATTTT
TAAATCAAAATAATGATATTATCATCATAGCAACACCTACAAATTCACATTTAGCAATAGCAAAAAAAGTTTTTAAACAA
TGCAAATGCGTTTTAATCGAAAAGCCTTTAGCCCTAAATTTAAAAGAAATAGATGAAATTTCAAATTTAGCTAAAGAATA
CAGCGTAAAAGTAGGTGTAGGTTTTTGCGAAAGATTTAATCCCGCAGTTTTAGCCCTAAAAAAAGAGCTTGAAAATGAAG
AAATTATCAGCATTAACATACAAAGATTTTCACCCTACCCACAAAGAATCAGCGATGTAGGGATTTTGCAAGATTTAGCC
GTACATGATCTTGATTTGCTTTGTTTTTTAAGCAAACAAGAAATAACAAAAACCAATTTGCTCAAAAAATACACCCAAGA
TCAAACAAGAGAAAGCGAAAGCATCATCCTATGTGAGCTTGAAAAATGTATAACTAGCATACATCAAAGCTGGAATAGCA
CACAAAAACTAAGAAAAATTCATCTTATTACTAAAAATCATTTTTATGAAGCCAATTTAAATGACTTTTCTTTATTAAAA
GATGGAAATTTTATAGAACTTACTCAACAAAGTCCACTTTTTGGAGAACATGAAGCTTTGTTAAAACTTATCGATAATCA
ACCCAATCATTTAGCCAGCACAAGCGATGCTTACAAAGTTCAAGAAATTTTAGAAAGGTTTGCGTGA

Upstream 100 bases:

>100_bases
TCAGAATATACAAGCGAACACATCTTATCTTTGCCTTTTTCACCTTTTTTAAGCGAAGAAGAACAAGAGCAAATTATTTG
TATTTTTAAAGATTAATTCC

Downstream 100 bases:

>100_bases
GATTAGTTTTATTTTTAAATATGGGCGGAGCTATGAATTTACAAGATTGTGAAGTTTTTTTAAAAAATATGTTTAATGAT
CCTTATATTTTAGGAATCAA

Product: Gfo/Idh/MocA family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDDIFYDDLDKFLNQNNDIIIIATPTNSHLAIAKKVFKQ
CKCVLIEKPLALNLKEIDEISNLAKEYSVKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCITSIHQSWNSTQKLRKIHLITKNHFYEANLNDFSLLK
DGNFIELTQQSPLFGEHEALLKLIDNQPNHLASTSDAYKVQEILERFA

Sequences:

>Translated_288_residues
MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDDIFYDDLDKFLNQNNDIIIIATPTNSHLAIAKKVFKQ
CKCVLIEKPLALNLKEIDEISNLAKEYSVKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCITSIHQSWNSTQKLRKIHLITKNHFYEANLNDFSLLK
DGNFIELTQQSPLFGEHEALLKLIDNQPNHLASTSDAYKVQEILERFA
>Mature_288_residues
MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDDIFYDDLDKFLNQNNDIIIIATPTNSHLAIAKKVFKQ
CKCVLIEKPLALNLKEIDEISNLAKEYSVKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCITSIHQSWNSTQKLRKIHLITKNHFYEANLNDFSLLK
DGNFIELTQQSPLFGEHEALLKLIDNQPNHLASTSDAYKVQEILERFA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: NA

Molecular weight: Translated: 33001; Mature: 33001

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDDIFYDDLDKFLNQNNDI
CEEEEEECCCCCHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCE
IIIATPTNSHLAIAKKVFKQCKCVLIEKPLALNLKEIDEISNLAKEYSVKVGVGFCERFN
EEEECCCCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHCC
PAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLAVHDLDLLCFLSKQEITKTNL
HHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHH
LKKYTQDQTRESESIILCELEKCITSIHQSWNSTQKLRKIHLITKNHFYEANLNDFSLLK
HHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHEEECCCEEECCCCCEEEEC
DGNFIELTQQSPLFGEHEALLKLIDNQPNHLASTSDAYKVQEILERFA
CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDDIFYDDLDKFLNQNNDI
CEEEEEECCCCCHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCE
IIIATPTNSHLAIAKKVFKQCKCVLIEKPLALNLKEIDEISNLAKEYSVKVGVGFCERFN
EEEECCCCCHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHEEEECCHHHHHCC
PAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLAVHDLDLLCFLSKQEITKTNL
HHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHH
LKKYTQDQTRESESIILCELEKCITSIHQSWNSTQKLRKIHLITKNHFYEANLNDFSLLK
HHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCHHHHHHHHHEEECCCEEECCCCCEEEEC
DGNFIELTQQSPLFGEHEALLKLIDNQPNHLASTSDAYKVQEILERFA
CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]