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The map label for this gene is ompR [H]

Identifier: 153951656

GI number: 153951656

Start: 820342

End: 821004

Strand: Direct

Name: ompR [H]

Synonym: JJD26997_0923

Alternate gene names: 153951656

Gene position: 820342-821004 (Clockwise)

Preceding gene: 153952246

Following gene: 153952369

Centisome position: 44.46

GC content: 27.45

Gene sequence:

>663_bases
ATGTTGAAATTTAAAATTTTAATTATAGAAGATGATGTAGATTTGAACGAACTACTTGTCTTAAAGTTAAAATCTAGTGA
TTATGAAGTTATATCTTTGGTGGATTTTTTTGGAGTTGAAGATTTGCTCGATAATGAGCAAATCGATCTTTTAATAGTCG
ATAGAAATTTGCCAAGTGGGGATTCTTTAGAAAAAATTCAAGATTTAAGAGAGCAAGGATACAAAGAAGCAGTTATTTTT
CTTACAGCCAAAGCTTTACATCAAGATTTACTCGAAGGTTTTGAAAGTGGTTGTGATGATTATGTTTGCAAACCTTTTGA
TTTTAATGAGCTTTTACTTCGCATTAAAGCAATTTTAAAACGCCATAAAAAAGAAGAAGAAAAATTATTTTTTGGTGATT
TTATTTTGGATTTGGCTAATTATGAATTCTTTTACAAAAATCAAAAATTAGAAATCTCAAATCTTGACTATGAGCTTTTA
AAATGTTTTTTTGAAAATCCAAATACCTTGCTTACTAGACAATTTTTAAGCGAAAGTGTTTGGAAAGATGATACTACAAG
TGATAAAACAATCAATATAGCTCTAACAAGACTTAGAAATAAATTTCCAAAACTAAAAGATCATATTATAAGCGTTAGAG
GTGTTGGCTATAAATTATGCTAA

Upstream 100 bases:

>100_bases
AGTTTTGGGTATGCTTTGGCTGTTGTTTTGATTGATGAAAAAGTTCAAAAAGAAGTATTAGATGAGTTAAAACAATTAGA
GGCGTGTGTATTTGTCCAAT

Downstream 100 bases:

>100_bases
AAACTAAAAATATTTTTATAGTTTTTTTTGTTGTATTGGCTTTGATTTTTGGGTTTATTTTTTATACTTTTACTAACTCT
TATCTTAATTTTTTGCTTAT

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLKFKILIIEDDVDLNELLVLKLKSSDYEVISLVDFFGVEDLLDNEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIF
LTAKALHQDLLEGFESGCDDYVCKPFDFNELLLRIKAILKRHKKEEEKLFFGDFILDLANYEFFYKNQKLEISNLDYELL
KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYKLC

Sequences:

>Translated_220_residues
MLKFKILIIEDDVDLNELLVLKLKSSDYEVISLVDFFGVEDLLDNEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIF
LTAKALHQDLLEGFESGCDDYVCKPFDFNELLLRIKAILKRHKKEEEKLFFGDFILDLANYEFFYKNQKLEISNLDYELL
KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYKLC
>Mature_220_residues
MLKFKILIIEDDVDLNELLVLKLKSSDYEVISLVDFFGVEDLLDNEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIF
LTAKALHQDLLEGFESGCDDYVCKPFDFNELLLRIKAILKRHKKEEEKLFFGDFILDLANYEFFYKNQKLEISNLDYELL
KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYKLC

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=30.5309734513274, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=28.2511210762332, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1790552, Length=219, Percent_Identity=30.5936073059361, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=27.8538812785388, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=30.6666666666667, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=28.7610619469027, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788394, Length=221, Percent_Identity=28.9592760180996, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=28.8990825688073, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=28.7610619469027, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=26.5217391304348, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790863, Length=234, Percent_Identity=26.9230769230769, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=25.9090909090909, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI2367329, Length=234, Percent_Identity=30.3418803418803, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25760; Mature: 25760

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFKILIIEDDVDLNELLVLKLKSSDYEVISLVDFFGVEDLLDNEQIDLLIVDRNLPSG
CEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHCHHHHHCCCCEEEEEEECCCCCC
DSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYVCKPFDFNELLLRIKAILK
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
RHKKEEEKLFFGDFILDLANYEFFYKNQKLEISNLDYELLKCFFENPNTLLTRQFLSESV
HHCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
WKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYKLC
CCCCCCCCCEEHHHHHHHHHHCCHHHHHEEECCCCCEECC
>Mature Secondary Structure
MLKFKILIIEDDVDLNELLVLKLKSSDYEVISLVDFFGVEDLLDNEQIDLLIVDRNLPSG
CEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHCHHHHHCCCCEEEEEEECCCCCC
DSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYVCKPFDFNELLLRIKAILK
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
RHKKEEEKLFFGDFILDLANYEFFYKNQKLEISNLDYELLKCFFENPNTLLTRQFLSESV
HHCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
WKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYKLC
CCCCCCCCCEEHHHHHHHHHHCCHHHHHEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]