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The map label for this gene is trbC [H]

Identifier: 153930587

GI number: 153930587

Start: 7133

End: 7513

Strand: Direct

Name: trbC [H]

Synonym: YpsIP31758_A0048

Alternate gene names: 153930587

Gene position: 7133-7513 (Clockwise)

Preceding gene: 153930606

Following gene: 153930599

Centisome position: 12.16

GC content: 42.78

Gene sequence:

>381_bases
ATGCAGATGACCATGCCGAGTATCAACATTAGTAACAAAACAATGCTTTTGTTAGGCATTGCTTTGCTGCTGATGTTATC
TACACATCCGGCATTAGCATCGAATACGAGTGGAGGAGGGCTACCATTTGATGAATGGTTCACCAAAATTCGTCAGTCTG
TAACCGGCCCGTTCGCATTTACAGCTGCAATAGTTGGATTAGTAGCAACCGGTGCCACCCTCATTTTTGGAGGGGATATG
AATGGCTTTATGAAAACTTTGATTTTTATTGTTCTTGTAATGTCCTTCTTAGTAGCCGCTCAAAATACACTGGCGGCAAT
CACAGGCCAAGGTGCCCAAATCGCTATGACATTTAAATTCATGGAAGCGGGGTCTATATAA

Upstream 100 bases:

>100_bases
AAGTCGTACTCCAGAAGGTCGCCGCATACAGGAAGTTGTTGAAGTTTCAGGTTATGTGGACGGCAAATATATTACTCGCA
ATCTTTGAGGAGAAGTACAA

Downstream 100 bases:

>100_bases
CAATGGCCTTACGCACGATCCCCATTCGTAAATCCGGTAATCGACATAACCTCTTCATGGATGGGGATCGTGAAATGGTT
ATGTTTTCTGGTTTGTTGGC

Product: conjugal transfer protein TrbC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MQMTMPSINISNKTMLLLGIALLLMLSTHPALASNTSGGGLPFDEWFTKIRQSVTGPFAFTAAIVGLVATGATLIFGGDM
NGFMKTLIFIVLVMSFLVAAQNTLAAITGQGAQIAMTFKFMEAGSI

Sequences:

>Translated_126_residues
MQMTMPSINISNKTMLLLGIALLLMLSTHPALASNTSGGGLPFDEWFTKIRQSVTGPFAFTAAIVGLVATGATLIFGGDM
NGFMKTLIFIVLVMSFLVAAQNTLAAITGQGAQIAMTFKFMEAGSI
>Mature_126_residues
MQMTMPSINISNKTMLLLGIALLLMLSTHPALASNTSGGGLPFDEWFTKIRQSVTGPFAFTAAIVGLVATGATLIFGGDM
NGFMKTLIFIVLVMSFLVAAQNTLAAITGQGAQIAMTFKFMEAGSI

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007039 [H]

Pfam domain/function: PF04956 TrbC [H]

EC number: NA

Molecular weight: Translated: 13238; Mature: 13238

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.9 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.9 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMTMPSINISNKTMLLLGIALLLMLSTHPALASNTSGGGLPFDEWFTKIRQSVTGPFAF
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
TAAIVGLVATGATLIFGGDMNGFMKTLIFIVLVMSFLVAAQNTLAAITGQGAQIAMTFKF
HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
MEAGSI
CCCCCC
>Mature Secondary Structure
MQMTMPSINISNKTMLLLGIALLLMLSTHPALASNTSGGGLPFDEWFTKIRQSVTGPFAF
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
TAAIVGLVATGATLIFGGDMNGFMKTLIFIVLVMSFLVAAQNTLAAITGQGAQIAMTFKF
HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
MEAGSI
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]