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The map label for this gene is trbD [H]

Identifier: 153930599

GI number: 153930599

Start: 7516

End: 7830

Strand: Direct

Name: trbD [H]

Synonym: YpsIP31758_A0049

Alternate gene names: 153930599

Gene position: 7516-7830 (Clockwise)

Preceding gene: 153930587

Following gene: 153930569

Centisome position: 12.81

GC content: 42.22

Gene sequence:

>315_bases
ATGGCCTTACGCACGATCCCCATTCGTAAATCCGGTAATCGACATAACCTCTTCATGGATGGGGATCGTGAAATGGTTAT
GTTTTCTGGTTTGTTGGCCGCCATATTGATATTTGCTGCTCAAGATTGGCGAGCTTTCTTTGCTGGTGTGGTTCTCTGGT
TTAGTGCTCTTTGGCTATTAAGACTAATGGCAAAATCAGACCCCAAAATGCGACAAATTTATATGCGCCAGCGCCTCTAT
AAAAAATATTATCCTGCAAGATCAACTCCGTTTCGAATCAATACAGAAGCGCAAGGAAAGCAATACAATGATTGA

Upstream 100 bases:

>100_bases
CCTTCTTAGTAGCCGCTCAAAATACACTGGCGGCAATCACAGGCCAAGGTGCCCAAATCGCTATGACATTTAAATTCATG
GAAGCGGGGTCTATATAACA

Downstream 100 bases:

>100_bases
ATATATTCCTATAGCCTATGGAATATTAGGATTTTTATTGGTTCTAATCCTATTTTCCTTAATACGCGCTGCAAATAACG
AGATCAGCTTAAAAAAATTT

Product: conjugal transfer protein TrbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MALRTIPIRKSGNRHNLFMDGDREMVMFSGLLAAILIFAAQDWRAFFAGVVLWFSALWLLRLMAKSDPKMRQIYMRQRLY
KKYYPARSTPFRINTEAQGKQYND

Sequences:

>Translated_104_residues
MALRTIPIRKSGNRHNLFMDGDREMVMFSGLLAAILIFAAQDWRAFFAGVVLWFSALWLLRLMAKSDPKMRQIYMRQRLY
KKYYPARSTPFRINTEAQGKQYND
>Mature_103_residues
ALRTIPIRKSGNRHNLFMDGDREMVMFSGLLAAILIFAAQDWRAFFAGVVLWFSALWLLRLMAKSDPKMRQIYMRQRLYK
KYYPARSTPFRINTEAQGKQYND

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016704
- InterPro:   IPR007792 [H]

Pfam domain/function: PF05101 VirB3 [H]

EC number: NA

Molecular weight: Translated: 12312; Mature: 12181

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRTIPIRKSGNRHNLFMDGDREMVMFSGLLAAILIFAAQDWRAFFAGVVLWFSALWLL
CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLMAKSDPKMRQIYMRQRLYKKYYPARSTPFRINTEAQGKQYND
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
ALRTIPIRKSGNRHNLFMDGDREMVMFSGLLAAILIFAAQDWRAFFAGVVLWFSALWLL
CCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLMAKSDPKMRQIYMRQRLYKKYYPARSTPFRINTEAQGKQYND
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]