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The map label for this gene is trbB [H]

Identifier: 153930606

GI number: 153930606

Start: 6020

End: 7120

Strand: Direct

Name: trbB [H]

Synonym: YpsIP31758_A0047

Alternate gene names: 153930606

Gene position: 6020-7120 (Clockwise)

Preceding gene: 153930626

Following gene: 153930587

Centisome position: 10.26

GC content: 42.96

Gene sequence:

>1101_bases
ATGTACCAGCTAAAGCCTCCAATAGGGAGGCTTTTTTATTATCATAAAACAAACAAAATATCCGTTGTTCTTGCGCCAGC
AAAATTTTCGTTATATCGTATATGGCACCTAATTATGCTATCAAACGAGAATTCCGGCATCATGCAACCTAACGTTGAAG
AAACATCAATAGGCTCCAGAGCAAAAGAAAAGCTGCGTAGAGACTTAGGGCCACTCATCATTGATGCTCTCGAAGATAAG
ATGACCGCCGAAATTATGCTCAATCCTGATGGCAAATTATGGATTGAAACATTTGGTAAGCCCATGCGCCACATCGGGGA
TCTTTCTTTCGTAAGAGCTGAAGCCATTATAAAAACTATCGCTGGTTATCACGGTAAAGAGATAACCACTCTAAAACCAA
CGCTTGAGGGTGAACTGCCTATTGACGGTTCACGTTTTGCAGGACAACTCCCACCAGTAGTTAGCGGCCCAACTTTTGCT
ATACGCAGAAAAGCAGTATCAATCTTCACTCTTACTCAATATGTAGAAAGCAACGTAATGACAGCGCATCAAAGCGAAGT
CATTAGAAATGCGATCAGAGACCATCGAAATATTTTGGTTATTGGTGGCACCGGCTCCGGTAAAACCACACTTGTAAACG
CCATTATCAATGAAATGGTCGTATTCGATCCCAGCGAACGAGTTTTCATCATTGAAGACACCGGAGAAATCCAGTGTGCC
GCTGAAAATTGTGTTCAATATCACTCAACCCTAGAAGTCACGATGACGATGTTACTAAAAACCACATTACGTATGCGGCC
AGACCGCATTCTGGTAGGTGAGGTTCGCGGTGCAGAAGCATTAGATCTTCTCGATGCTTGGAATACTGGCCATGAAGGAG
GAGCAGCAACCCTACATGCAAACAATGCGTTAAGTGGTTTAACCCGATTGAAATCTCTTATCTCTCGTAATTCGTCAGCA
CCAGCGGAAATAGAACCCCTTATTGCAGAGGCGGTTCACATAATAATTCATATAAGTCGTACTCCAGAAGGTCGCCGCAT
ACAGGAAGTTGTTGAAGTTTCAGGTTATGTGGACGGCAAATATATTACTCGCAATCTTTGA

Upstream 100 bases:

>100_bases
CTATTGTTACTGATCATCAGGCTTATATCATAAGAAAATGGCATGAGGCCGCACAAAAGAAAATCGATACCAGAACCAGC
TAAACGATAGCAAATTCAAT

Downstream 100 bases:

>100_bases
GGAGAAGTACAAATGCAGATGACCATGCCGAGTATCAACATTAGTAACAAAACAATGCTTTTGTTAGGCATTGCTTTGCT
GCTGATGTTATCTACACATC

Product: conjugal transfer ATPase TrbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MYQLKPPIGRLFYYHKTNKISVVLAPAKFSLYRIWHLIMLSNENSGIMQPNVEETSIGSRAKEKLRRDLGPLIIDALEDK
MTAEIMLNPDGKLWIETFGKPMRHIGDLSFVRAEAIIKTIAGYHGKEITTLKPTLEGELPIDGSRFAGQLPPVVSGPTFA
IRRKAVSIFTLTQYVESNVMTAHQSEVIRNAIRDHRNILVIGGTGSGKTTLVNAIINEMVVFDPSERVFIIEDTGEIQCA
AENCVQYHSTLEVTMTMLLKTTLRMRPDRILVGEVRGAEALDLLDAWNTGHEGGAATLHANNALSGLTRLKSLISRNSSA
PAEIEPLIAEAVHIIIHISRTPEGRRIQEVVEVSGYVDGKYITRNL

Sequences:

>Translated_366_residues
MYQLKPPIGRLFYYHKTNKISVVLAPAKFSLYRIWHLIMLSNENSGIMQPNVEETSIGSRAKEKLRRDLGPLIIDALEDK
MTAEIMLNPDGKLWIETFGKPMRHIGDLSFVRAEAIIKTIAGYHGKEITTLKPTLEGELPIDGSRFAGQLPPVVSGPTFA
IRRKAVSIFTLTQYVESNVMTAHQSEVIRNAIRDHRNILVIGGTGSGKTTLVNAIINEMVVFDPSERVFIIEDTGEIQCA
AENCVQYHSTLEVTMTMLLKTTLRMRPDRILVGEVRGAEALDLLDAWNTGHEGGAATLHANNALSGLTRLKSLISRNSSA
PAEIEPLIAEAVHIIIHISRTPEGRRIQEVVEVSGYVDGKYITRNL
>Mature_366_residues
MYQLKPPIGRLFYYHKTNKISVVLAPAKFSLYRIWHLIMLSNENSGIMQPNVEETSIGSRAKEKLRRDLGPLIIDALEDK
MTAEIMLNPDGKLWIETFGKPMRHIGDLSFVRAEAIIKTIAGYHGKEITTLKPTLEGELPIDGSRFAGQLPPVVSGPTFA
IRRKAVSIFTLTQYVESNVMTAHQSEVIRNAIRDHRNILVIGGTGSGKTTLVNAIINEMVVFDPSERVFIIEDTGEIQCA
AENCVQYHSTLEVTMTMLLKTTLRMRPDRILVGEVRGAEALDLLDAWNTGHEGGAATLHANNALSGLTRLKSLISRNSSA
PAEIEPLIAEAVHIIIHISRTPEGRRIQEVVEVSGYVDGKYITRNL

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=136, Percent_Identity=33.0882352941176, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 40600; Mature: 40600

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQLKPPIGRLFYYHKTNKISVVLAPAKFSLYRIWHLIMLSNENSGIMQPNVEETSIGSR
CCCCCCCHHHEEEEEECCEEEEEEECCHHHHHEEEEEEEEECCCCCCCCCCCCHHHCCHH
AKEKLRRDLGPLIIDALEDKMTAEIMLNPDGKLWIETFGKPMRHIGDLSFVRAEAIIKTI
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHH
AGYHGKEITTLKPTLEGELPIDGSRFAGQLPPVVSGPTFAIRRKAVSIFTLTQYVESNVM
HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
TAHQSEVIRNAIRDHRNILVIGGTGSGKTTLVNAIINEMVVFDPSERVFIIEDTGEIQCA
HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEH
AENCVQYHSTLEVTMTMLLKTTLRMRPDRILVGEVRGAEALDLLDAWNTGHEGGAATLHA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEC
NNALSGLTRLKSLISRNSSAPAEIEPLIAEAVHIIIHISRTPEGRRIQEVVEVSGYVDGK
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHCCCCCE
YITRNL
EEECCC
>Mature Secondary Structure
MYQLKPPIGRLFYYHKTNKISVVLAPAKFSLYRIWHLIMLSNENSGIMQPNVEETSIGSR
CCCCCCCHHHEEEEEECCEEEEEEECCHHHHHEEEEEEEEECCCCCCCCCCCCHHHCCHH
AKEKLRRDLGPLIIDALEDKMTAEIMLNPDGKLWIETFGKPMRHIGDLSFVRAEAIIKTI
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHH
AGYHGKEITTLKPTLEGELPIDGSRFAGQLPPVVSGPTFAIRRKAVSIFTLTQYVESNVM
HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
TAHQSEVIRNAIRDHRNILVIGGTGSGKTTLVNAIINEMVVFDPSERVFIIEDTGEIQCA
HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEH
AENCVQYHSTLEVTMTMLLKTTLRMRPDRILVGEVRGAEALDLLDAWNTGHEGGAATLHA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEC
NNALSGLTRLKSLISRNSSAPAEIEPLIAEAVHIIIHISRTPEGRRIQEVVEVSGYVDGK
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHCCCCCE
YITRNL
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]