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The map label for this gene is rbsR [H]

Identifier: 152974386

GI number: 152974386

Start: 639447

End: 640418

Strand: Direct

Name: rbsR [H]

Synonym: Bcer98_0559

Alternate gene names: 152974386

Gene position: 639447-640418 (Clockwise)

Preceding gene: 152974385

Following gene: 152974387

Centisome position: 15.65

GC content: 37.35

Gene sequence:

>972_bases
ATGAGTACGATTAAAGACGTTGCAAAATTAGCGGGAGTATCTGTTGCGACCGTTTCTAGAGTACTAAATAAAAATGGATA
CGTTCACGAAGATACATTAAAAAAGGTGGAACGAGCGATTGAACTGTTGGATTATAAACCTAGTACAGTGGCGCGTTCTT
TGTATAATAAGAAATCTCGTTTAATTGGCTTAGTCGTTCCAAACATTGTGAATCCATTCTTTCCAGAAATTGCGCGTGCT
GTAGAAGATGTAGCGCATAAGCAAGGATACACCGTTGTACTTTGTAATTCTGATGAAAGTTTAGAAAAAGAGAAACAATA
TATTGATGTACTCAGACAAAATAACGTAGATGGATTTATTGTCGCAACAAATCCTGAAAATAGCGTGAATTACATGAATA
TATCTGTACCAGTTGTGGCAATTGATCGCCTATTTAATGAGCGGATTCCCACAGTATATGCAGATAATTATGCGGGGATT
CAAAAAGCAACAAAGTTACTGTTAGAGAAAGGGTGTAACCATATTGCTCATATACGTGGACCGCGTGATGTAAGTACTGC
AAATGAACGCTTTGAAGGTTTTGTTGATATGATTACGGAATACGGTCTTTCTTATATGATTGCGGAAAGTACGTTTGACC
CAGCAAATAGTGAGCGTGTTGCGAGGAAATTACTAGACGAATATCCGCATATTGATGGTATTGTAGCAGGAAATGATTTG
ATTGCAATTGGTGTCGTAAAGGCTGCTTTACAAAAGGGGATTGCTATTCCTAACGATTTACAAATTATTGGGTTTGATGG
CATTTCTTTAGCGGAAATGATGTGTCCATCTATTACGACTGTTGCACAACCTATTTATGAGATGGGACGTATTGCGACCG
AATTGTTATTAGAACAAATGGAAGGAAAACGGTTAGAAACAGAACATTACCGTTTGCCGATTGAAATTATCGAACGAAAT
ACAACGAAATAA

Upstream 100 bases:

>100_bases
GTATAACATATACTCTTTTTGAGTAGAAATGATTGACGTATTTTTGCGAATAGGTTATATTACTTCGTGTAAACGGTTAC
ACAAGGTAGGGAGGAAAAGA

Downstream 100 bases:

>100_bases
GGAGATGAAGTCGTTGCCAAATATAGCTGTAGTAGGGAGTATTTCAATGGATTTAGTAGCCGTTTCAAAGAAAAGACCGA
AAGCTGGAGAAACAGTAATC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSTIKDVAKLAGVSVATVSRVLNKNGYVHEDTLKKVERAIELLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEIARA
VEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPENSVNYMNISVPVVAIDRLFNERIPTVYADNYAGI
QKATKLLLEKGCNHIAHIRGPRDVSTANERFEGFVDMITEYGLSYMIAESTFDPANSERVARKLLDEYPHIDGIVAGNDL
IAIGVVKAALQKGIAIPNDLQIIGFDGISLAEMMCPSITTVAQPIYEMGRIATELLLEQMEGKRLETEHYRLPIEIIERN
TTK

Sequences:

>Translated_323_residues
MSTIKDVAKLAGVSVATVSRVLNKNGYVHEDTLKKVERAIELLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEIARA
VEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPENSVNYMNISVPVVAIDRLFNERIPTVYADNYAGI
QKATKLLLEKGCNHIAHIRGPRDVSTANERFEGFVDMITEYGLSYMIAESTFDPANSERVARKLLDEYPHIDGIVAGNDL
IAIGVVKAALQKGIAIPNDLQIIGFDGISLAEMMCPSITTVAQPIYEMGRIATELLLEQMEGKRLETEHYRLPIEIIERN
TTK
>Mature_322_residues
STIKDVAKLAGVSVATVSRVLNKNGYVHEDTLKKVERAIELLDYKPSTVARSLYNKKSRLIGLVVPNIVNPFFPEIARAV
EDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFIVATNPENSVNYMNISVPVVAIDRLFNERIPTVYADNYAGIQ
KATKLLLEKGCNHIAHIRGPRDVSTANERFEGFVDMITEYGLSYMIAESTFDPANSERVARKLLDEYPHIDGIVAGNDLI
AIGVVKAALQKGIAIPNDLQIIGFDGISLAEMMCPSITTVAQPIYEMGRIATELLLEQMEGKRLETEHYRLPIEIIERNT
TK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=330, Percent_Identity=33.6363636363636, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1790369, Length=329, Percent_Identity=32.8267477203647, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=32.7272727272727, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1788474, Length=311, Percent_Identity=35.048231511254, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1789068, Length=298, Percent_Identity=32.2147651006711, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789202, Length=297, Percent_Identity=31.986531986532, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787580, Length=314, Percent_Identity=28.6624203821656, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI48994940, Length=307, Percent_Identity=28.3387622149837, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1790715, Length=325, Percent_Identity=25.8461538461538, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1786540, Length=326, Percent_Identity=26.0736196319018, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787906, Length=332, Percent_Identity=25.9036144578313, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786268, Length=311, Percent_Identity=25.4019292604502, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790689, Length=306, Percent_Identity=24.8366013071895, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789456, Length=350, Percent_Identity=26, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790192, Length=270, Percent_Identity=24.8148148148148, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35981; Mature: 35850

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIKDVAKLAGVSVATVSRVLNKNGYVHEDTLKKVERAIELLDYKPSTVARSLYNKKSR
CCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLVVPNIVNPFFPEIARAVEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFI
EEEEECHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
VATNPENSVNYMNISVPVVAIDRLFNERIPTVYADNYAGIQKATKLLLEKGCNHIAHIRG
EEECCCCCCEEEEEEEHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCHHHHCCC
PRDVSTANERFEGFVDMITEYGLSYMIAESTFDPANSERVARKLLDEYPHIDGIVAGNDL
CCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEECCCC
IAIGVVKAALQKGIAIPNDLQIIGFDGISLAEMMCPSITTVAQPIYEMGRIATELLLEQM
HHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EGKRLETEHYRLPIEIIERNTTK
CCCCCCHHHHCCCHHHCCCCCCC
>Mature Secondary Structure 
STIKDVAKLAGVSVATVSRVLNKNGYVHEDTLKKVERAIELLDYKPSTVARSLYNKKSR
CHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LIGLVVPNIVNPFFPEIARAVEDVAHKQGYTVVLCNSDESLEKEKQYIDVLRQNNVDGFI
EEEEECHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
VATNPENSVNYMNISVPVVAIDRLFNERIPTVYADNYAGIQKATKLLLEKGCNHIAHIRG
EEECCCCCCEEEEEEEHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCHHHHCCC
PRDVSTANERFEGFVDMITEYGLSYMIAESTFDPANSERVARKLLDEYPHIDGIVAGNDL
CCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEECCCC
IAIGVVKAALQKGIAIPNDLQIIGFDGISLAEMMCPSITTVAQPIYEMGRIATELLLEQM
HHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
EGKRLETEHYRLPIEIIERNTTK
CCCCCCHHHHCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]